Oncorhynchus tshawytscha (Chinook salmon): 112225770
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Entry
112225770 CDS
T05605
Name
(RefSeq) transcriptional regulator ATRX
KO
K10779
transcriptional regulator ATRX
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04110
Cell cycle
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
112225770
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
otw03000
]
112225770
03036 Chromosome and associated proteins [BR:
otw03036
]
112225770
Transcription factors [BR:
otw03000
]
Eukaryotic type
Zinc finger
Cys4 GATA-factors
112225770
Chromosome and associated proteins [BR:
otw03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
112225770
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
ADD_ATRX
Helicase_C
Motif
Other DBs
NCBI-GeneID:
112225770
NCBI-ProteinID:
XP_042158954
LinkDB
All DBs
Position
LG21:complement(40268850..40374399)
Genome browser
AA seq
2401 aa
AA seq
DB search
MSKASAESTDQVMEEEVGQLPITDQEEEDEDEEAGSSTETERPSSSHTKRKPSVAAKQVG
GNESDTSDESGQDDGASDGMLVVRPPVGTDNKEDKSRGAMKLRVDLSRRKTGKMSKASAE
PTDQVMEEEVGQLPITDQEEEEEEAGSSTETERPSSSHTKRKPSVAAKQVGGNESDTSDE
SGQDDGASDGMLVVRPPVGTDNKEDKSRGAMKLRVDLSRRKTGKMSKASAEPTDQVMEEE
VGQLPITDQEEEEEEEEAGSSTETERPSSSHTKRKPSVAAKQVGGNESDTSDESGQDDGA
SDGMLVVRPPAGTDNKEDKSRGAMKLRVDLSRRKTDTTLQERIDCTACGQQVNHFQRHSV
FEHPMLHVLLCKSCYKYYTSDDINKDEDGMDEQCRWCAEGGNLICCDYCHNAFCKKCILR
NLGRKELSMITDEDSKWSCYICSPQPLSDIASNCSNILTKLESFWRTGRKKEREEKERKE
VKGHSKGKGHHHHGKAVVNGKEHSDGSGTLTFSYKTLKVPKELVKRTKKLIETTTGLNNT
FIHFIQQAEEEQGAGGGGSGTRHRHLKAFRSVLADLKKAHAALEKDLESQFTSQDQGMQN
GDAVSNTDGHDGHDQIDNGQEAEEDKMADTEDGEEDGGVSEDTEMEGSPTPTPQDHSETG
SQAKDQTVVKMEVEDGTEEEADRDKDIVSVGPSVPDELFQMVKSLADSTGLTPGNDATEL
TATSQSENPAAGSTRKLHDTQKEKAMPKVKNLILKLTPVPVVTTRASRSKSKDGGKERSK
DGGKERERSKDGGKEERSKDGWKKEERSKDGGKEKERSKDGGKERSKDGGKERSKGVGKE
KERSKDEGKEVAGDVASEEDSRCSSRTKTTPLRKSPEGKNKMSASQENIDSEGEEKSPSK
LKRRTKGSSEKERGNAEEKERKESKASSMVTSDPSKQDVDSDSDEVPDILVQTAAAEHSS
DDDVQQDADSNQGNKRVKKCLFKLSKKEEEQVGEEEEQVGEEEEQVGEEEEEEQVGEEEE
KQVGEEEGENDKEKTDKKPAAKRKLKADDSDNSESDSDEDAKMKKKSSTASDKKTSKKKQ
KVSDGSSNSDLEKEMKGLSKLSTGKRRSSRVKKEREEKENKGGDRRRSYELKRKARSRGA
KQQDSSSDDDEEEEGGGSGEESGDQQKIKPIVEETVVAGRETFHQSSGEEGNHDASQMAV
DDDDDDPENRIAKKMLLAQIKANYSSGAEESSDEDGEEKEQKKGGEEEEEEEDDGEEEEE
EEEEGDSGSDMDVKKSGGRRHRLLRHKLTLSEGESGEEKEKPASKGKKETKRTRRKVGSD
DSADLDSEESASSSESGVSEEISEEEEESEEESEEGSSRRRTTRSSKKKKKKKKEERSYA
QKKKRRRIKVQDSSSDEKSGSGEDGSGKEDGDTPKGQRKKIRKILKDDKLRTETRDALKE
EEERRRRIAEREQLREKLREVLVVEEASAVACPITTKLVLDEDEETKEPMVQVHRNLVTK
LKPHQVDGVQFMWDCCCESVKKTNKNSGSGCILAHCMGLGKTLQVVTLLHTLLLCEKLDF
STALIVCPLNTVLNWLNEFEKWQYGFKDEESLEVTELATVKRPQERASALQQWQEDGGIM
IIGYEMYRNLTQGRNIKSKKLKETFQKTLVDPGPDFVICDEGHILKNEASAISKAMNSIK
TRRRVVLTGTPLQNNLIEYHCMVNFIKENLLGSVKEFRNRFVNPIQNGQAADSTDQDVRI
MKKRAHILYEMLNGCVQRRDYSALTKFLPPKHEYVVSVRVTPIQCTLYRHYLEHLTGAGN
VVEGGRGRAGTKLFQDFQMLSRIWTHPWCLQLDYISKENKGYFDEDSMDEFIASETEESS
MSMTSEDEKQKKKKKRGKARKKDSDSDSDALEVIKEWNTSSRGGDPSSRNRAEPQEEVRP
ASSPGTRSPDWHKEFVTEADSEILEHSGKMVLLFEILRMAEEVEDKVLVFSQSLISLDLI
EDFLELAGRAKEEEKQSPYKGEGKWFRNIDYYRLDGSTNALNRKKWAEEFNDTSNVRGRL
FLISTRAGSLGINLIGANRVIIFDASWNPSYDIQSIFRLYRFGQLKTCYVYRFLAQGTME
EKIYDRQVAKQSLSFRVVDQQQIERHFTMNELTELYAFEPDLLDDPTGKKSKRTTPMLPK
DPFLAELLHSNKEQIVGYHEHDSLLDHKEEEALSEEDRKAAWAEYEAEKKGLSLRVNHGA
YGGQMDMGGANSYFPFNVAALASMSNPQLEELINQGRQKVMEATNALKFLPRESLEDTIG
RVWKENPALTESQVQAMALGRQASVEMELKRREAVYRDVLNKQQTLMMYVQKVITNRKVR
EQQMAMANQAQLMSQMNGMLGAGGMSQMELLGLYQQLGALQGHPTHPSMGGKNPGPSKGN
L
NT seq
7206 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaggcctcagctgaatctacagaccaagtgatggaggaggaagtaggtcagctt
ccgattacagaccaggaggaggaggacgaggacgaggaggctgggagctcaacagagact
gagagaccctcctcttctcacaccaagaggaagccttctgttgcagccaagcaagttgga
gggaatgagtcagacacctcggacgagagtggacaggacgatggcgcctcagatgggatg
ttggttgtgcggcctcctgttgggactgacaacaaggaggacaagagcagaggagccatg
aagctccgagtggacctctcacggagaaagacaggtaaaatgagtaaggcctcagctgaa
cctacagaccaagtgatggaggaggaagtaggtcagcttccgattacagaccaggaggag
gaggaggaggaggctgggagctcaacagagactgagagaccctcctcttctcacaccaag
aggaagccttctgttgcagccaagcaagttggagggaatgagtcagacacctcggacgag
agtggacaggacgatggcgcctcagatgggatgttggttgtgcggcctcctgttgggact
gacaacaaggaggacaagagcagaggagccatgaagctcagagtggacctctcacggaga
aagacaggtaaaatgagtaaggcctcagctgaacctacagaccaagtgatggaggaggaa
gtaggtcagcttccgattacagaccaggaggaggaggaggaggaggaggaggctgggagc
tcaacagagactgagagaccctcctcttctcacaccaagaggaagccttctgttgcagcc
aagcaagttggagggaatgagtcagacacctcggacgagagtggacaggacgatggcgcc
tcagatgggatgttggttgtgcggcctcctgctgggactgacaacaaggaggacaagagc
agaggagccatgaagctcagagtggacctctcacggagaaagacagataccacattgcag
gagaggatagactgcaccgcctgtggacagcaggtcaatcacttccagcgccactcagtg
tttgagcacccgatgctccatgtgctcctctgcaagtcgtgttataagtattacaccagc
gatgacatcaataaagacgaggacggcatggacgaacagtgcaggtggtgtgctgaaggt
ggcaacctgatctgctgtgactactgccacaacgccttctgtaagaagtgcatcctgcgt
aacctggggcgcaaggagctgtccatgatcaccgacgaggacagtaaatggtcctgctat
atctgcagccctcagcctctctcagacatcgcctccaactgctccaacatcttgaccaag
ctggagagcttctggcgcacgggacgcaagaaagagagggaggagaaagagaggaaggag
gtgaaagggcacagtaagggtaaaggtcaccaccaccatggtaaagctgtggtgaacggt
aaggaacattcagacgggtcagggaccctcaccttctcctataagaccctgaaggtcccc
aaggagctggtgaagaggaccaagaagctgattgagacgaccacagggctcaacaacacc
ttcatccatttcatccagcaggctgaggaggagcagggagcaggaggaggtggcagcggg
accagacacagacacctcaaggccttcaggtctgttctggctgatctgaagaaggcccat
gctgctctagagaaagacttggagtcacagttcacttcccaggaccaggggatgcagaat
ggggatgctgtttccaacaccgacggccatgacggccacgatcagatagacaatgggcaa
gaggcagaagaggacaaaatggcagacactgaggatggggaggaggatggtggtgtgtca
gaggacacagagatggaggggagccccacccccacacctcaggaccactcagagacaggc
agccaggctaaagaccagacagtggtgaaaatggaggtggaggatggaacagaggaggaa
gctgaccgggataaagacatcgtgtccgtcgggccgtccgtccctgacgagctcttccag
atggtcaagagtttagcggactccaccgggttaacgcccggtaacgacgccacggaactc
acagcgactagccaatcggagaaccccgctgctggctcaaccaggaagttacatgacacc
cagaaggagaaggccatgcccaaggttaagaacctcatcttgaagctgacgcctgttcct
gtggttaccacacgcgcctccaggtctaagagtaaggatggagggaaggagaggagtaag
gatggagggaaggagagggagaggagtaaggatggagggaaggaggagaggagtaaggat
ggatggaagaaggaggagaggagtaaggatggagggaaggagaaggagaggagtaaggat
ggaggtaaggagaggagtaaggatggagggaaggagaggagtaagggtgttgggaaggag
aaagagaggagtaaggatgaagggaaggaggtggcgggagatgtggcctccgaggaggac
agccgatgctccagtcgcacaaagaccacacccctcaggaagtcaccggaggggaaaaac
aagatgtccgcctctcaggagaacatcgactcagaaggcgaggagaagagccccagcaag
ctgaagaggagaaccaagggcagctctgagaaagaacgggggaacgcggaggagaaggag
cggaaagagagcaaggcctcctccatggtaacctctgacccttcgaaacaggatgtggac
tcagattctgacgaggttccagacatcctggtccagactgcagcggcggaacacagctcg
gacgatgatgtgcagcaggacgccgacagtaaccagggcaacaagcgcgtcaagaagtgc
ctgttcaaactgagcaagaaagaggaggagcaggtgggagaggaggaggagcaggtggga
gaggaggaggagcaggtgggagaggaggaggaggaggagcaggtgggagaggaggaggag
aagcaggtgggagaggaggagggagagaatgacaaggagaagacggacaagaagccggcg
gccaaacgcaaactgaaagccgacgactccgacaactcagagtctgactccgatgaagac
gcaaagatgaaaaagaagtcctccacggcttctgacaagaagacatccaagaagaagcag
aaggtctcggacggctcctccaactcggacctggagaaggagatgaagggactcagcaaa
ctgtcgacggggaaacggaggagcagccgtgtgaagaaggaaagggaggagaaggagaac
aagggcggagatcggaggcggtcgtacgaactgaaacgcaaagccagaagtagaggagcc
aagcagcaagattcatcgtctgatgatgacgaggaggaggagggaggagggtctggagag
gagagtggagaccagcagaagattaaacccatcgtggaggagactgtggtagcagggagg
gaaaccttccaccagtcctcaggagaagaaggtaaccatgacgcttctcagatggctgtt
gatgatgacgatgatgatccagaaaacaggattgccaagaagatgctgctggcccagatc
aaggccaactactcttcaggagcagaggagagctctgacgaggacggagaagagaaggaa
cagaaaaagggaggagaggaggaggaggaagaggaggatgatggtgaggaagaggaggag
gaggaggaggaaggggactctggctctgacatggatgtgaagaagagtggggggcgtcgc
caccggctactccgccacaaactgacgctgagcgagggagagtcaggagaggagaaagag
aaaccagccagcaaggggaagaaggagaccaagaggaccagacggaaagtggggagtgat
gactcagcagacttagactctgaggagtcggctagcagcagtgagtcaggagttagtgag
gagatcagtgaggaggaggaggagtcagaggaggagtcagaggagggcagcagtcgcagg
aggaccacgcgctcctccaagaagaagaagaagaagaagaaggaggagaggagctacgcc
cagaagaagaaacgccggcgcatcaaggttcaggactcttcatctgacgagaagagcggg
tcaggagaggacggctcggggaaggaggatggagacactcctaaaggacagaggaagaag
atcagaaaaatcctcaaggacgacaagctgaggacggagacgagagatgccctgaaggag
gaggaggagaggaggagacgcatcgctgagagggagcagctcagggagaaactcagagag
gtactcgtggtggaggaggcgtccgccgtggcttgtccaatcacaaccaagctggtgctg
gatgaagacgaggagaccaaggagcccatggtgcaggtccaccgcaatctggtcactaag
ctcaaaccacaccaggtcgacggggtccagttcatgtgggactgctgttgtgagtcggtg
aagaaaaccaacaagaactctggttctggatgtatcctggctcactgtatgggtctggga
aaaacactgcaggtggtaaccctactccacacactactgctgtgtgaaaagttagacttc
tccacggctctgatcgtctgtcctctcaacacggttctcaactggctcaatgagtttgag
aagtggcagtacggcttcaaggacgaggagagtttagaggtgacggagctggccacggtg
aagcgtcctcaggagagagcgtctgctctgcagcagtggcaggaggatggaggaatcatg
atcattggctatgagatgtaccgtaacctcacacagggtagaaacatcaagagcaagaaa
ctcaaagagaccttccagaagaccctggttgacccaggcccagactttgtgatctgtgat
gagggccacatcttgaagaacgaggcgtcggccatctctaaagccatgaactccatcaag
acccgacggagagtggtgctcaccggcacaccgctgcagaacaacctcatagagtaccac
tgcatggtgaacttcatcaaggagaacctgctggggtcagtgaaggagttcaggaaccgc
ttcgtcaaccccatccagaacgggcaggcagcggactccacagaccaggatgttcggatc
atgaagaagagggctcacatcctctacgagatgctcaatggatgtgttcagagaagagac
tactctgccctgaccaagttcctgcctcctaaacatgagtacgttgtgtccgtcagagtc
acgcccatccagtgtactctataccgacactacctggagcacttaacaggtgcggggaac
gtggtggaggggggtcggggccgagccgggaccaaactgttccaggacttccagatgctc
agcagaatctggacccatccctggtgcctgcagctggactacatcagcaaggaaaacaag
gggtactttgacgaggacagcatggacgagttcatcgcctcggagaccgaggagtcttct
atgagcatgacctctgaagacgagaaacagaaaaagaagaagaagcgagggaaggccagg
aagaaggacagtgactcagacagtgacgctctagaggtgataaaggagtggaacaccagc
tcccgagggggagacccttccagccgcaaccgggcggagccacaggaggaagtccgccca
gcttccagccctggcaccaggagtcctgactggcacaaagagtttgttacggaggccgac
tctgagatcctggagcattctgggaagatggtgctgctgtttgagatcctccgtatggcc
gaggaggtggaggacaaagttctggtgttcagtcagtctctgatctctctggacctgatt
gaagacttcctggagctggctggccgagccaaagaggaggagaaacagtctccctacaaa
ggtgaggggaagtggttccggaacatagactactaccgcttggacggctccaccaacgcc
ctgaaccggaagaagtgggcagaagagttcaatgacaccagcaacgtccgaggtcggttg
ttcctgatctcgaccagggctggttctctgggaatcaacctgataggagctaacagggtc
atcatcttcgacgcgtcctggaacccgtcgtacgacatccagagtatcttcaggctctac
cgctttggacagctcaagacctgctatgtctaccgattcctggctcagggtactatggaa
gagaagatctatgaccgccaggtggctaaacagtctctgtccttccgagtggtggatcaa
cagcagatagagagacatttcaccatgaatgagctgacggaactctacgcctttgaacct
gaccttctggatgatcccactggcaagaagagcaagaggaccacgcctatgctgccaaag
gaccccttcctagctgagctgctccacagcaataaggagcagattgtgggctatcatgaa
catgactccctgctggatcacaaggaagaggaggctctcagcgaggaggaccgcaaagca
gcctgggccgagtacgaggcggagaagaagggtctgtctctgcgtgtgaaccatggagcg
tacggaggacagatggacatgggaggagctaacagctacttccccttcaacgttgccgca
ctggcctctatgtccaaccctcagctggaggagttgatcaaccagggccgtcagaaggtg
atggaggccaccaacgctctcaagttcctccccagagaatctctagaggacaccatcggg
agagtgtggaaggagaacccagccctaacggagtcccaggtccaggccatggctctgggg
agacaggccagtgtagagatggaactcaaacgaagagaagctgtctacagagacgtcctc
aataagcaacagactctaatgatgtacgttcagaaggtgatcaccaacaggaaggtgaga
gagcagcagatggccatggccaaccaggcccagctgatgagccagatgaacggcatgctg
ggagctggagggatgagccagatggaactcttggggttgtaccaacagctgggggcgcta
cagggtcatcccacccacccctccatgggcggcaagaaccccggcccctccaagggcaac
ctgtaa
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integrated database retrieval system
