Oncorhynchus tshawytscha (Chinook salmon): 112225909
Help
Entry
112225909 CDS
T05605
Name
(RefSeq) collagen alpha-1(I) chain
KO
K06236
collagen type I alpha
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04510
Focal adhesion
otw04512
ECM-receptor interaction
otw04518
Integrin signaling
otw04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
112225909
04518 Integrin signaling
112225909
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
112225909
09142 Cell motility
04820 Cytoskeleton in muscle cells
112225909
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
otw00536
]
112225909
Glycosaminoglycan binding proteins [BR:
otw00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
112225909
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
112225909
NCBI-ProteinID:
XP_024245808
LinkDB
All DBs
Position
LG27:complement(4867216..4888390)
Genome browser
AA seq
1449 aa
AA seq
DB search
MFSFVDIRLALLLSATVLLARGQGEDDRTAGSCTLDGQFYNDRDVWKPEPCQICVCDSGT
VMCDEVICEDTSDCPNPVIPHDECCPICPDDGFQEPKVEGPQGDRGAKGEPGPAGFPGND
GIPGQPGLPGPPGPPGPPGLGGNFSPQMSGGFDEKSGGGMSMPGPMGPMGPRGPPGPPGS
SGPQGFTGPPGEPGEAGSSGPMGPRGPAGPPGKNGDDGESGKPGRPGERGASGPQGARGF
PGTPGLPGIKGHRGFSGLDGAKGESGPAGPKGEGGASGENGAAGAMGPRGLPGERGRAGP
NGAAGARGNDGAAGAAGPPGPTGPAGAPGFPGGPGAKGEVGAQGARGGEGPQGSRGEAGN
PGPAGAAGPAGNNGADGTPGTKGAPGSSGIAGAPGFPGPRGPPGPQGAGGAPGPKGNTGE
VGANGAKGEAGAKGESGPAGVQGPAGPAGEEGKRGGRGEPGGAGARGAPGERGAPGSRGF
PGSDGASGPKGGPGERGGAGVAGAKGNTGEPGRNGEPGMPGSKGMTGSPGSPGPDGKTGP
SGAGGQDGRPGPPGPVGARGQPGVMGFPGPKGAAGEGGKPGERGVMGPGGAVGAPGKDGD
VGAPGAPGVAGPSGERGEQGAGGPPGFQGLPGPQGAIGETGKPGEQGLPGEGGAPGAAGS
RGDRGFPGERGAPGPSGPAGARGSPGSAGNDGGKGEAGAAGAPGGQGPPGLQGMPGERGA
GGLPGLKGDRGDQGAKGADGAGGKDGVRGMTGPIGPNGPAGSPGDKGETGAPGPGGPSGA
RGAPGERGESGAPGPAGFAGPPGGDGQPGAKGEAGDNGAKGDGGAQGPAGPTGAPGPQGP
AGNTGAKGARGAAGPPGATGFPGAAGRVGPPGPSGNNGPPGPPGPGGKEGQKGNRGETGP
AGRPGELGAAGPPGAQGEKGQPGGDGPNGPSGTPGPQGIGGQRGIVGLPGQRGERGFPGL
AGQLGEPGKQGPGGPSGERGPPGPMGPPGLAGAPGESGREGTPGNEGSSGRDGAAGPKGE
RGESGAAGASGAPGPPGAPGPVGPAGKSGDRGESGPAGPAGIAGPAGPRGSSGPAGARGD
KGEAGEAGERGMKGHRGFTGMQGPSGPSGPSGESGPAGASGPAGPRGPSGSAGAAGKDGM
SGLPGPIGPPGPRGRSGEMGPSGPPGPPGPPGPPGPPGGGFDMGFIAQPAQEKAPDPFRH
FRADDANVMRDRDLEVDTTLKSLSQQIENIRSPEGTKKNPARTCRDLKMCHPDWKSGEYW
IDPDQGCTQDAIKVYCNMETGETCVYPTEAEIPKKSWYTSKNIKEKKHVWFGEAMTDGFQ
FEYGSEGSSAQDVNIQLTFLRLMATEASQNITYHCKNSIAYMDQQSGNLKKSLLLQGSNE
IEIRAEGNSRFTYSVTEDGCTSHTGAWGKTVIDYKTTKTSRLPIIDIAPMDVGAPNQEFG
IEVGPVCFL
NT seq
4350 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggatattcggttagcgctgttgctcagcgcaacagtgcttttggca
agaggacaaggcgaggacgatcgcaccgccggcagctgtacgttggacggtcaattctac
aacgacagagatgtctggaaacccgagccatgccagatctgcgtgtgcgacagcggcacc
gtcatgtgcgacgaagttatctgcgaggacacatccgactgccccaatccagtgatcccc
cacgacgaatgctgccccatctgccccgacgacggcttccaggagccaaaggttgaggga
ccccagggtgatcgtggagccaagggagagccaggacctgctggtttccccggcaacgat
ggtattcccggccagcccggccttcctggacccccaggcccccctggaccccctggtctt
ggcggaaacttctcccctcagatgtctggtggttttgatgagaagagcggcggtggtatg
tccatgcccggccccatgggccccatgggtccccgtggtcccccaggacctcctggctca
agtggacctcagggtttcactggcccccctggtgagcctggtgaggctggttcttctggt
cccatgggcccccgtggtcctgctggtccccctggcaagaacggagatgatggtgagtct
ggcaagcctggtcgccctggtgagcgtggagcttccggcccacagggagctcgtggattc
cctggaacccccggccttcccggcatcaagggacacagaggattcagcggtcttgacgga
gctaagggagagtctggccctgctggacccaagggagagggtggtgcatccggggagaac
ggagccgctggagccatgggaccccgtggtctgcctggtgagagaggccgtgctggtccc
aacggagctgctggtgctcgtggtaacgatggtgctgctggtgctgctggtcctcctggc
cccactggccccgctggtgcccctggtttccccggtggccctggagccaagggagaggtt
ggtgcccagggagctcgtggtggcgagggaccccagggatcccgtggagaggctggtaac
cccggacccgctggcgctgctggccccgctggaaacaacggtgctgacggaacccccggt
accaagggtgcccctggttcttctggtattgctggtgctcctggcttccctggaccccgt
ggaccccccggaccccagggtgctggtggagctcccggacccaagggtaacactggtgag
gttggtgctaatggagccaaaggagaggctggtgctaagggagagtctggccccgctgga
gtccagggacccgccggccctgctggtgaggaaggcaagcgaggaggccgtggtgagccc
ggtggtgctggtgcccgtggagcccccggcgagcgcggtgcccctggtagccgtggtttc
cctggttctgatggagcttctggccccaagggtggccctggtgagcgtggtggtgccgga
gttgctggagctaagggtaacactggtgagcctggccgcaatggcgagcctggtatgcct
ggatccaagggtatgactggtagccctggcagccccggtcccgatggcaagactggcccc
tctggtgccggtggtcaagatggtcgccccggacctcccggccccgttggagccagaggc
cagcccggagtcatgggattccccggacctaagggagccgcaggtgagggtggcaagcct
ggtgagagaggagtcatgggacccggtggtgctgttggtgctcccggcaaggatggtgat
gttggtgctcctggtgctcccggtgttgccggaccttctggagaacgaggcgaacaggga
gccggtggcccccctggattccagggacttccaggaccccaaggcgctattggtgagact
ggaaagcccggagagcagggtcttcccggtgagggtggtgcccctggtgccgctggatcc
agaggtgacagaggtttccccggtgagcgtggtgcccctggcccatctggacccgctggt
gcccgtggctctccaggatctgctggtaacgatggtggtaagggagaggctggtgccgca
ggtgcccccggtggccaaggaccccctggcctgcagggaatgcccggagagcgtggtgct
ggtggtctgccaggcctgaagggagacagaggtgaccaaggagccaagggtgctgatggc
gccggtggtaaggatggcgtccgtggtatgactggccccattggacccaacggccctgct
ggatctcctggtgacaagggagagactggcgctcctggacctggtggaccttctggtgcc
cgtggtgcacctggtgagcgcggtgagtctggcgcccctggacccgctggattcgctggg
cctcctggtggtgacggtcagcctggtgctaagggagaggctggagataacggtgccaag
ggtgacggtggtgctcagggacccgctggacctacaggagcccctggacctcagggtccc
gctggaaacaccggagctaagggcgcccgtggtgctgctggtccccctggtgccactggt
ttccccggtgctgctggtagagttggacctcctggcccatctggcaacaacggacccccc
ggacccccaggccctggtggaaaggaaggacagaagggtaaccgtggtgagactggcccc
gccggtcgtcctggtgagctcggcgctgccggaccccctggtgcccagggagagaaggga
cagcctggtggagatggtcccaatggaccctctggaactcccggacctcagggtattggt
ggacagcgtggtattgttggtctgcccggacagaggggcgagcgcggtttccccggcctc
gccggacaactgggagagcctggcaagcagggacctggtggcccctctggtgagcgtgga
ccccccggacccatgggaccccctggactggctggagcacccggtgagtctggtcgcgag
ggaactcctggtaacgagggatcttctggtcgcgatggtgctgctggacccaagggagag
cgtggtgagtctggtgccgctggtgcttccggtgcccccggaccccctggtgcccctgga
cccgttggccctgctggaaagtctggtgaccgtggagagtctggtcctgctggccccgct
ggtattgctggccctgctggtccccgtggctcatcaggacccgctggagctcgtggagac
aagggagaggctggcgaggctggagagagaggcatgaagggacatagaggattcactggc
atgcagggaccctctggcccctctggaccatctggagagtcaggacctgctggagcctct
ggccccgctggacctagaggaccttctggatctgctggtgccgccggtaaggatggtatg
agcggtctgcccggccccatcggacctcccggaccccgtggtcgctctggagagatggga
ccctctggaccccctggccctcccggtccccctggcccccccggacctcccggcggtgga
ttcgacatgggcttcattgctcagcccgctcaggagaaggcccccgatcccttccgtcac
ttccgcgccgacgacgccaacgtgatgcgcgaccgcgacctggaggttgacaccactctc
aagagcctgagccagcagattgagaacatccgctctcccgagggcaccaagaagaacccc
gcccgcacctgcagagacctgaagatgtgccaccccgactggaagagcggcgagtactgg
atcgaccccgaccagggctgcacccaggatgccatcaaggtttactgcaacatggagacc
ggcgagacctgcgtctaccccaccgaggcagaaatccccaagaagagctggtacaccagc
aagaacatcaaggagaagaagcacgtctggttcggcgaggcaatgaccgatggcttccag
ttcgagtatggcagcgagggttccagcgctcaggatgttaacatccagctgaccttcctg
cgccttatggccactgaggccagccagaacatcacataccactgcaagaacagcatcgcc
tacatggaccagcagtccggcaacctcaagaagtccctgctgctccagggctccaacgag
atcgagatcagagccgagggcaacagccgcttcacatacagcgtcaccgaggacggctgc
acgtcgcacaccggtgcatggggcaagacagtcatcgactacaagacaacgaaaacatcc
cgtctgcctattattgacatcgctcctatggacgttggtgcacccaatcaggaatttggc
attgaagttggcccagtctgcttcttgtaa
DBGET
integrated database retrieval system
