Oncorhynchus tshawytscha (Chinook salmon): 112225934
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Entry
112225934 CDS
T05605
Name
(RefSeq) LOW QUALITY PROTEIN: protein CASC3
KO
K14323
protein CASC3
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03013
Nucleocytoplasmic transport
otw03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
112225934
03015 mRNA surveillance pathway
112225934
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
otw03019
]
112225934
Messenger RNA biogenesis [BR:
otw03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
112225934
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Btz
Motif
Other DBs
NCBI-GeneID:
112225934
NCBI-ProteinID:
XP_024245842
LinkDB
All DBs
Position
LG27:5887833..5902311
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AA seq
780 aa
AA seq
DB search
MADRRRRRRRASQDSEEDDESGSGSESGKSLSPTTKPRVRDPEPVEAPAVRVVPENAAES
ECESEDGVGEAVLSDYESADPEENGSHSEGGEEEEEEVPPPAAGPKPTPASDTPAAEGEL
QEGGGKDEEGEKSMRKEVKCEDKGNLAGERQSGDGQESTEDSENKGAKPGQKLDDDQDRN
NPAYIPRKGMFFEHDVRGNAQEEERPKGRNRKLWKDEGRWEHDRFREEEQAPKSREELVA
IYGYDIRNGGVSNERSYRQRKPRHSTSPVRDKRWQDGDWERPVHTSWQQGGNPNSRGAPP
AVSLQQSGPXPLSSPKHPAQQQPPRPSSHPPPRGFQGNRPPQAHHRNDRNQESQRPGPKA
HPAEPLQTQSLPPMDGEQGPRGRGNRGAHTERSPSVVVEEVRSEEDDERNTTTVTTSQSV
YYNRHYSGKGDRERDSAPPPRRQEQQRGGSAPPADNQVTRDASPAPERPVEKKSYSLARR
TRTRATELGKQASLEEPASTVSSSALKSEPWHGPGQSQGDAGDSSQGTVLTGLDQDLTRL
SLAGPNWPQNPSSYLHAEMRGIPSSIHMGGAPPQYSNIEELGAGNRAKRYSSQRQRPSPE
PAPPMHIGVMEGHYYEPMSYQGPIYSHGDSPAPLPPQGILVQPEMHLPHPGHPGLHPHQS
SGPMPNPALYAAPPVSMSPGQPPPQQLLAPPFYPPPGVMTFGNNNYPYPAGATLPPMYNP
PAQSQVYGQSQVYGGVTYYDPMQQQAQPKPSPPRRSSQPVTVKPPPPEDRSGKASQEVRS
NT seq
2343 nt
NT seq
+upstream
nt +downstream
nt
atggcggaccggcgacgtcgaaggaggcgtgcatcccaggacagcgaggaggacgatgaa
tctggttcgggatcagaaagtggaaagtccctttcgccaacgacgaagccccgagtacgg
gaccctgaaccagtagaggcaccagctgttcgtgtggtgccggaaaacgcggctgaatcc
gagtgtgaaagtgaagatggtgtaggagaagctgtcctttctgactatgaaagcgcagat
cctgaggagaatggctcccattcagagggaggtgaggaggaggaggaagaggtccctcca
ccggctgctgggccaaaacccactcctgcttccgacacccctgctgcagagggggagctg
caggaaggagggggaaaggatgaggagggtgagaaaagtatgaggaaagaagtgaagtgt
gaagacaaaggcaacctggcaggggagcgtcaaagcggggatggacaggaaagcacagaa
gactctgagaataaaggcgctaaaccaggccagaagctggatgatgaccaggatcgtaat
aacccagcctatatcccccgtaagggaatgttctttgagcacgacgtcagaggaaatgca
caggaggaggaacggcctaagggtcgtaacaggaagctgtggaaggatgagggtcgctgg
gaacacgataggttcagggaggaggagcaggcgcccaagtcacgtgaggagctggttgcg
atctatggctatgacatccgcaacggaggtgtctccaatgagcggtcctatagacagcgc
aagcccagacacagcacctctccagtccgggacaagcgctggcaggacggagactgggag
aggcccgtccatacctcctggcagcaaggagggaaccccaacagccgtggcgccccccca
gccgtgtccctgcagcagtctggtcctnnccccctcagcagccccaaacacccagcgcag
caacaaccccccaggccctcctcccatcccccaccccggggcttccagggcaaccgccct
ccccaggcccaccacaggaatgaccgaaaccaggagtcccaacggccaggccccaaggcc
caccccgccgagcccctccagacccagagtttaccgcccatggacggggaacaaggcccc
aggggccgggggaacagaggggcccatacagagcgcagcccttcggtcgtggtggaagag
gtccgcagcgaggaggatgacgagcgcaacacaactacagtgacaacgtcacagtccgtg
tactacaatcgccactacagtggcaagggagatcgcgaaagggactctgcgccaccgcca
cgacgacaggagcagcagcgagggggatctgctcctccggcagacaaccaggttacccgc
gatgcctccccagctccagagcgccccgtggagaagaagtcttattccctagccaggaga
actcgcacccgggccactgagctgggcaagcaggcctctcttgaggaacctgcctccact
gtctcttcctcggccctgaagagtgagccgtggcatggccccggtcagagtcagggggat
gctggagacagcagccaggggacagtactcacagggttggaccaggacctgaccagactc
agcctggccggaccgaactggccccagaacccatcttcgtatctacacgctgagatgagg
ggcatccctagctctatacacatgggtggagcacctccacaatacagtaacatagaagag
ctgggagctggtaaccgggcaaagcggtactcgtcccagcgccagaggccaagcccggag
cccgctcctcctatgcacataggggtcatggagggccactactacgagcccatgtcttac
caaggaccaatctattcccacggcgacagccccgcccccctcccaccccagggcattctg
gtccagcctgagatgcacctcccccacccaggacacccaggtctacacccccaccagtcg
agcggccccatgcccaacccggctctctacgctgctccccctgtctccatgtcccctgga
cagccccctccacagcagctgttggccccgccattctaccctccgccaggtgtcatgacc
tttgggaacaacaactacccctacccggcaggagccaccctgccccccatgtacaacccc
ccggcccagtcgcaggtgtacggccagtcgcaggtgtacggtggggtgacgtactacgac
ccgatgcagcagcaagcccagcccaaaccctcgcctccccggcgttcctcccagcccgtc
accgtcaaacctccccctccagaggaccggagtgggaaggccagtcaggaggtcagatcc
tag
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integrated database retrieval system
