Oncorhynchus tshawytscha (Chinook salmon): 112226116
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Entry
112226116 CDS
T05605
Name
(RefSeq) zinc finger BED domain-containing protein 4
KO
K24637
zinc finger BED domain-containing protein 1 (E3 SUMO-protein ligase ZBED1) [EC:2.3.2.-]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
otw03000
]
112226116
04121 Ubiquitin system [BR:
otw04121
]
112226116
Transcription factors [BR:
otw03000
]
Eukaryotic type
Zinc finger
Cys2His2 BED
112226116
Ubiquitin system [BR:
otw04121
]
Ubiquitin ligases (E3)
UBL E3 ligases
112226116
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Dimer_Tnp_hAT
zf-BED
DUF659
hAT-like_RNase-H
DBD_Tnp_Hermes
Gly_radical
DUF5371
Motif
Other DBs
NCBI-GeneID:
112226116
NCBI-ProteinID:
XP_024246127
UniProt:
A0A8C8H0H9
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Position
LG27:13235235..13250897
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AA seq
650 aa
AA seq
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MMTEFKRAFSLVWDHFTLVTPNKVQCALCSQRLSFNKNTSAMLRHLRSRHPSEAWYSNST
SGAHSSTSNSTSGVHSMFSNSIISGSGVHSSFSGTTGLNSMFTNSAAAGHHIQVRTTRQE
DLDDALVNMLVKDTKPFSVVEEEGFTAFVQKLDPSYNLPNKQALKKMVGSRCEFINDHVV
SQMVISDFVSLTSDMWTSIDKHSYIAVTGHLVAENAQLSTFLLGISKLPENHKVIHIEEA
KNQLVASWGLHSRVAAFVTENSENMVATVQKLGILQLPSFAHVLNLVIKRSMEATLELQD
IRSQARAIVSFFKSNQNAEMRLAEVQGQLGRPEQKLIQEVDSRWNSSFSMLERVFDQRES
VAAALSTLDTDIIPLGSADYEVIHQCLGVLGSFNQATAELASEKRVSASKVIPLVRMLKI
TLENKHGAIIHSTATQLASNLQSELQTSCSMVETEPILGLSALLDPRFKMLAFGNQGYAQ
EAVKLLTSECASLIRINPDKDDILPPSTTRSTTPSLTSPHTSSWAMETASISMATSPSKS
HDGGLWEMFDSKVGETQSVQSSTADAAVEVQHYLSDPYLNRVENPMHYWEKHSKVYPHLF
QLARKYLSVPASSVPCERIFTKAGDVFNKKRSCLSMKAVEQIMLLNKGLV
NT seq
1953 nt
NT seq
+upstream
nt +downstream
nt
atgatgactgaatttaagagagccttctcactggtgtgggatcacttcactctagtgaca
cccaataaggtccagtgcgccctctgttcacaacggcttagcttcaacaaaaacacctcc
gccatgttaaggcacctacgatcaaggcacccaagcgaggcttggtacagcaactcaaca
tctggggcccactcaagcacaagcaactcaacatctggagtccactcaatgttctcaaac
tcaataattagtggttctggagtccactcatcgttctctggtactacaggactaaactca
atgtttacaaacagtgctgctgctggacaccacatccaagtcaggaccaccagacaagag
gacctggatgatgccctagtcaacatgttggttaaagacaccaagccattttcagtagtc
gaggaagaaggattcactgctttcgtccaaaagctagacccaagctacaatcttccaaac
aagcaagcactgaagaaaatggtggggtctcggtgtgaattcatcaatgatcatgttgta
tctcagatggtaatttctgactttgtcagcctgacttcggacatgtggacatctatagac
aagcacagttacattgcagtgacggggcatttggtagcagaaaatgcccagttatccact
ttcctccttgggatttctaagctgcctgaaaaccacaaagtgatccacattgaggaggcc
aaaaaccaactggtggcgagctggggcctccacagcagggtcgctgcatttgtcacagag
aacagcgaaaatatggtagccacggttcagaaattaggaatcctccagttgccctctttt
gcacacgtcctgaaccttgtgattaagaggtccatggaggctactttggagctgcaggac
atccgctcccaagcgcgggctatcgtgtctttcttcaagtcgaatcagaacgcagagatg
aggttagccgaggtgcaggggcagctaggcaggccggaacagaagctgatccaggaagtg
gactcgagatggaacagtagcttttctatgctggaacgcgtctttgatcagagggagtct
gtggctgctgctctcagcaccctggacacggacatcatccctctgggatctgctgactat
gaggtcatccaccagtgtctcggagtgctgggttccttcaaccaggccacagctgagctc
gcctcagagaaacgcgtctcggcttccaaggtcattcctcttgtccggatgctgaagata
acccttgagaataagcacggtgccatcatacactctacggctacacagctggcgtctaac
ctgcagagtgagcttcagacgagctgcagtatggtggagaccgagccaatcctaggtcta
tcggctctcctagacccgcgcttcaaaatgttggccttcgggaaccaaggctacgctcag
gaggcggtgaagctcctcacctccgagtgcgcctcattaatccggataaatcccgacaag
gacgacattctaccgccctccaccaccaggtcgacgacgccctccctgacatcaccccac
acctcctcctgggcaatggaaacagcttccatctccatggcaacatctccgtctaagtcc
cacgatgggggtctgtgggagatgtttgacagtaaagtgggtgagacacagagcgtccag
agcagcacagcggatgcagcggtggaggtacaacactacctcagtgacccgtacctgaac
cgagtggagaaccccatgcactactgggagaagcactccaaggtgtacccgcacctgttc
cagctggctcggaaatacctcagcgttcccgcctcgtctgtgccatgtgagcgcatattc
accaaagctggagatgtgttcaataaaaagaggagttgcctcagtatgaaggctgtagag
cagataatgctgttgaataaaggcctcgtatag
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