Oncorhynchus tshawytscha (Chinook salmon): 112226117
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Entry
112226117 CDS
T05605
Symbol
cnot2
Name
(RefSeq) CCR4-NOT transcription complex subunit 2 isoform X1
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112226117 (cnot2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
otw03019
]
112226117 (cnot2)
Messenger RNA biogenesis [BR:
otw03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
112226117 (cnot2)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
112226117 (cnot2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
112226117
NCBI-ProteinID:
XP_024246177
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All DBs
Position
LG01:complement(15115458..15123242)
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AA seq
568 aa
AA seq
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MITVTNGMFSATRKKFVEGVESDYPDENMYYSQPSMYPHRSDKDVSALSARSHIPTTAPF
ELEMLSSPSPSSSGQLSQLGASLYGPQSALGFSIRGMGNNTPQLNRSLTQGTPLPSHITP
TTGVPTMSLHTPPSPSRGILPMNSRNMLNHSQVGQGIGMGGGRTNSMGSSGLGSPNRSPP
SIICMPKQQPARQPFTINSMSGFGMNRNQAFGMNNSLSSNIFNGTVFNLPLTDGSENVTG
LDLSDFPALADRSRREGSANPTPLLNPLAGRAPYEASSLHLMTSSVGMVTKPSNEPTQDF
SIHNEDFPALPGPNYKDPTLSNDDSKTNLNSTGKSTSSADGPKFPGDKTSSAQNNSQKKG
IQVLPDGRVTNIPGGMVTDQFGMIGLLTFIRAAETDPGMVHLALGSDLTTLGLNLNSPEN
LYPKFASPWASAPCRPQDIDFHVPSEYLTNIHIRDKLAAIKLARYGEDLLFYLYYMNGGD
LLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTLKTNTYERGTYYFFDCLNWRKVAKVK
EFHLEYEKLEERPHVPSTFNYNPAQQAF
NT seq
1707 nt
NT seq
+upstream
nt +downstream
nt
atgataacagtgacaaacggcatgttcagtgctacgagaaagaagtttgtagagggggtg
gaaagtgactaccctgatgagaacatgtactacagccagccgtccatgtacccacatcgg
tcggacaaagacgtaagtgctctgtctgctcgatcgcacatccctactacagctcccttt
gaacttgaaatgctctcgtctccctcaccgtcgtcatcaggtcaactatcccagcttggg
gccagtttatatggcccacagagtgcactaggcttctcgataaggggcatgggcaacaac
acgcctcagttaaaccgcagcttaacgcaaggcactccgctaccgagccatatcaccccc
accactggggtacccaccatgtccctccataccccaccctcgccaagcagggggatcctg
ccgatgaactcgaggaacatgctgaaccactcccaggtgggccagggcatcgggatgggc
ggcggcaggaccaacagcatgggcagctcagggctgggtagccccaaccgcagccccccc
agcattatctgtatgcccaaacagcagcctgcacggcagcccttcaccatcaacagcatg
tcgggattcgggatgaaccggaaccaggcgtttggaatgaacaactcgttatcaagcaac
atcttcaatggcacagtctttaacctgcccctcacagacggcagtgaaaacgtgacgggg
ctagacctgtctgacttccctgcgttagcagacaggagtcggagggaaggaagcgcaaac
ccaacaccgctactcaacccactagctggaagggccccctatgaagcctcttctcttcat
ctcatgacctcatcagttggcatggtgacgaagccatcgaacgagccgacgcaggatttc
tccatccacaacgaggacttccctgcactgcctggtcccaactacaaggaccccacgttg
agcaacgatgacagcaaaacaaacctaaactctacaggcaagagcacgtccagtgcagac
ggtcctaagttccccggagacaagacgagctcagctcagaacaacagccagaagaaaggg
atccaggtgttacctgacgggcgggtgacgaacattcccgggggaatggtgacggaccag
tttgggatgattggcttgctgacgtttatccgagcagcggagacggacccgggcatggtg
cacttggcactggggagtgacctcacaacgcttggactcaacctcaactctccagaaaac
ctgtaccccaagtttgcctccccctgggcatcagcaccgtgtcgacctcaagacattgac
ttccacgtcccctctgagtacttaaccaacatccacataagggacaagctggcagctatt
aaactggcgcggtacggtgaagacctgctgttctatctgtactacatgaacggaggagac
ctgctacagctcctggcagcagtagagctctttaaccgggattggcggtaccacaaagag
gagcgggtgtggatcacgcgggcaccgggcatggagcccacactaaagaccaacacctat
gagagggggacctactatttctttgattgtcttaactggaggaaggtagccaaggtaaag
gagttccacctggagtacgaaaagctagaagagaggccccacgtcccatctaccttcaac
tacaacccagctcagcaggccttctga
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