KEGG   Oncorhynchus tshawytscha (Chinook salmon): 112226121
Entry
112226121         CDS       T05605                                 
Name
(RefSeq) histone deacetylase 5 isoform X3
  KO
K11406  histone deacetylase 4/5 [EC:3.5.1.98]
Organism
otw  Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04371  Apelin signaling pathway
Brite
KEGG Orthology (KO) [BR:otw00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04371 Apelin signaling pathway
    112226121
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:otw03036]
    112226121
Enzymes [BR:otw01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     112226121
Chromosome and associated proteins [BR:otw03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class II HDACs
     112226121
SSDB
Motif
Pfam: Hist_deacetyl HDAC4_Gln Clp1
Other DBs
NCBI-GeneID: 112226121
NCBI-ProteinID: XP_024246136
LinkDB
Position
LG09:78434350..78520826
AA seq 1124 aa
MLLRPTVPGLCAMLQTIYETESCFSSDAVSSREQPLELLPLSQVSAMPSAAVEVKTTLPS
GMQSPVGGSEQGVGGGPVDLRTDPRLGPLGGGVDPAMREQQLQHELLLLKQQQELQKQLL
FAEFQKQHEVLTRQHEVQLQEHLKQQQEILAAKRQQELEQKRKLEQQRHEELEKQRLEQQ
LLMLRNKEKGKESAIASTEVKLKLQEFLLSKKEPGTPGGLNHSFPQKCWGAHHTSLDPNS
PPQSNTPGTPPSYKLPPLLGSYDGRDDFPLRKTASEPNLKVRSRLKQKVAERRSSPLLRR
KDGTVISTFKKRAIEISVSSMCSSAPGSGPSSPNSSNSAIAENGSSGSVPNIHAEQLRSL
HQTLNADGTVSPLSLYTSPSLPNISLGLPANSHLTANQKLLQEAERQAIQTMRQGGALTG
KFVSTSSLPASCLPPGMQHDLDSTQAPNSHSSHSSLLQHVLLLEQARQQSALLSVPMYGQ
SPLVTGDRVSNSMRTVNKLPRHRPLSRTQSAPLPQSPQALQQLVMQQQHQHFLEKQKQYQ
LNKILSKGVEIPRQPPTHPEETEEELTETQEMQEEGAESERLGEGRPQEQRLQKEESGEM
SPPSERLLTPLKGESTESDLEEEDDEDEAIELRECDEEGVPYGQASLSISGMPHRPLGRA
QSSPATASVKGAPMGEVPIKHLFTTGLVYDTFMLKHQCMCGNTHIHPEHAGRIQSVWSRL
QETGLLGRCERIRGRKATLDEIQTVHSEYHTLLYGTSPLNRQKLDSKKLLGPISQKMYAV
LPCGGIGVDSDTVWNEMHSSGAVRMAVGCVIELAFKVAAGELKNGFAVVRPPGHHAEEST
AMGFCFFNSVAITAKLLQQKLGVSKVLIVDWDIHHGNGTQQAFYNDPNVLYISMHRYDDG
NFFPGSGAPEEVGVGPGVGFNTNIAWTGGVEPPMGDVEYLTAFRTVVMPIANEFSPDVVL
VSAGFDAVEGHQSPLGGYNVTAKCFGHLTKQLMKLAGGRVVLALEGGHDLTAICDASESC
VAALLGDELDPLPQAVLQQKPCPKAAASLERVIEIQSKHWSSLQRLGPTVGQSLMDAQRR
EKDEADTVTAMASLTVDTEQAAAPTVSAETSRSTEEPMEEEPVL
NT seq 3375 nt   +upstreamnt  +downstreamnt
atgcttttaaggcccactgtgccagggctgtgcgcaatgttgcagaccatctatgagacc
gagtcctgcttctcctcagacgcagtgtccagcagggagcaacctctggagctgctgccc
ctgtcccaagtgtcggccatgcccagtgctgctgtggaggtgaagacaactctcccctcg
gggatgcagagccctgtgggcggcagtgagcagggtgttggaggtggtcccgtggacctg
aggacggatcccaggctgggacccctgggcggaggagtggacccagccatgagggagcag
caactgcagcatgaactgctcctcctcaaacagcagcaggagcttcagaaacagcttctc
ttcgctgagttccagaagcagcatgaggtcctgacacgccagcatgaggttcagctgcag
gagcacctgaagcagcagcaggagatcctggcggccaagcggcagcaggagctggagcag
aagaggaagctggagcagcagaggcatgaggagctggagaaacagaggctggagcagcag
ctcctcatgctacgcaacaaggagaagggcaaagagagtgccattgccagtacggaggtg
aagctgaagctccaggagttcctcctgagcaaaaaagagcctggcacacctggcggtcta
aaccattccttcccccagaaatgctggggggcccaccacacctctctggaccccaactcc
ccccctcagagtaacactccgggaacgccgccctcctacaaactgcccccactcctgggg
tcctacgatggcagggacgatttccctctccggaaaactgcctcagagcccaatctgaag
gtgcgttcgcggttaaaacagaaggtagctgagaggcggagtagtcctctgctgaggagg
aaggacgggacagtgataagtaccttcaaaaagagagccatcgagatctctgtgtcctcc
atgtgtagcagtgcccctggctccgggcccagctcgcccaacagctccaacagtgccatc
gcagagaacggctccagcggatctgtccccaacatccacgcagagcagctgcggtccctc
caccagacccttaacgctgatgggacagtcagtccgctgagcctctacacgtccccctcg
ctgcctaacatctccctgggcctgccagccaactcgcacctcaccgccaatcagaagctg
ttgcaggaggcggagaggcaggccatccagaccatgcgtcagggtggggctctgacgggc
aagtttgtcagcacctcgtccctgccggcatcatgcctgccacctgggatgcaacacgac
ttagactccacccaggcccccaacagccacagcagtcactcctccctactgcagcacgtc
ctcctgctggagcaggcccgccagcagagtgccctcctctcagtccccatgtacggtcag
tcgccgttggtgacgggggaccgggtgtccaacagtatgcgcacggtgaacaagctaccg
cgccaccggcccctgagccgcacacagtctgcacccctcccccagagcccccaggccctg
caacagctcgtcatgcagcagcagcaccagcacttcctggagaagcagaagcagtaccag
ctcaacaagattctgtcaaaaggggtggagattcctcgccaaccgcccacccacccagag
gagacagaggaggagctcacagagacacaggagatgcaggaggagggggcggagtctgag
cgtctgggggaggggcgtcctcaggagcagaggctccagaaggaagagtcgggggagatg
tcacccccttcagaacgcctgctgacccccctgaagggcgagagcacagagagcgacctg
gaggaagaggatgatgaagacgaggccatcgagctgagggagtgtgatgaggagggcgta
ccttacggccaagcatcgctgtccatttcgggcatgccccacagacctctgggaagggcc
cagtcctcccctgccactgccagcgtcaagggggctcccatgggtgaggtccccatcaag
cacctcttcactacagggttggtgtacgacacctttatgctgaagcaccagtgtatgtgt
gggaatacccacatccacccagaacacgccggccgcatccagagtgtgtggtcccggctg
caggagactgggctcctgggccgctgtgagaggattcgggggaggaaggccacgttggat
gagatccagactgtgcattcagaataccacacactgctgtatggaaccagtcccctcaac
agacagaaactagacagcaagaagctcttaggtccaatcagtcagaagatgtatgctgtg
ttgccatgtggaggcattggggtggacagtgacactgtgtggaacgagatgcactcctcg
ggcgctgtcagaatggctgttggctgcgtcatcgagctggctttcaaagtggccgccggg
gaactgaagaacggctttgccgtggtgcgtccaccaggacatcacgctgaggaatccact
gccatgggcttctgcttcttcaactcagtggccatcacagccaagctgctacagcagaaa
ctaggagtgagcaaggtcctcatcgtggactgggacattcaccatggtaacgggacacag
caggctttttacaacgaccccaatgtactttacatttccatgcatcgctacgacgatgga
aacttcttccccggcagtggggctcctgaagaggtgggggttggacctggtgttggcttc
aacacaaacatcgcttggacagggggcgtagaaccgcccatgggtgatgtggagtacctg
actgccttcaggacggtggtgatgcccatagccaacgagttctcccctgacgtggtccta
gtgtccgctgggtttgatgccgtggagggccaccagtcccctctgggaggatacaacgtc
actgctaaatgtttcggccacctcaccaagcagctgatgaagctggcagggggacgtgta
gtcctggcgctggaaggaggtcacgacctcacggccatctgtgatgcctccgagtcctgt
gtggcggccctgctcggcgatgagttggaccccctgccacaggctgtcctgcaacagaag
ccctgtccaaaagctgctgcctctctagagagggtcatcgagatacagagtaaacactgg
agctctctccaaaggttgggtcccacggtgggccagtccttaatggatgcccagcggaga
gagaaggacgaggccgacactgtcaccgccatggcatcgcttaccgtggatactgagcag
gccgccgctcccaccgtctccgcggagaccagcaggtctacagaagagccaatggaagaa
gagcccgtcttgtag

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