Oncorhynchus tshawytscha (Chinook salmon): 112226318
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Entry
112226318 CDS
T05605
Name
(RefSeq) cysteine protease ATG4D
KO
K08342
cysteine protease ATG4 [EC:3.4.22.-]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04136
Autophagy - other
otw04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
112226318
04136 Autophagy - other
112226318
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
otw01002
]
112226318
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112226318
03029 Mitochondrial biogenesis [BR:
otw03029
]
112226318
Peptidases and inhibitors [BR:
otw01002
]
Cysteine peptidases
Family C54: Aut2 peptidase family
112226318
Membrane trafficking [BR:
otw04131
]
Autophagy
Autophagosome formation proteins
Atg8 conjugation proteins
112226318
Mitochondrial biogenesis [BR:
otw03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
112226318
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_C54
Motif
Other DBs
NCBI-GeneID:
112226318
NCBI-ProteinID:
XP_024246499
LinkDB
All DBs
Position
LG20:17208715..17217205
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AA seq
466 aa
AA seq
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MNPSSPCEGQSPEGDPPDDWFHLSTMSLGTQGSDGSQDDPEEPEERGRLKSKLVSAWNNV
KYGWSFKSKARFSKTSPLTMLGQSYLLSHGVERECFRRAFATLLWLTYRRGFPQLNGSSL
TTDSGWGCMLRSGQMLLAQGLLLHLLPPGWTWLSANHVSKDDMEVQESRSLGPEVTKKGR
RKSIVSFLESRTEVTHRRVVSWFGDHPFAPFGLHQLVEQGTSSGKKAGDWYGPSIVAHIL
RKAVDAASAEVSNLTVYVAQDCTVYIDDVVRLCERPLSEGSTGPSPTWKSVIILVPVRLG
GEVLNPTYIKCVKNLLRLECCIGIIGGKPKHSLFFVGYQDEQLLCLDPHYSQSTVDITQD
NFPLESFHCKCPRKISFSRMDPSCTIGFYAKSQKEFELLCSAVSTALSSSTEKYPIFTIA
EGQGQDGGQEDESNAPPNSITHILTKDKARLRRTNNSNSMDEFVLL
NT seq
1401 nt
NT seq
+upstream
nt +downstream
nt
atgaaccccagttctccctgtgagggccagagccctgagggtgaccctccagacgattgg
ttccacctttccaccatgtctctgggaactcagggctctgatggaagccaggatgaccca
gaggaacctgaggagagaggcagactcaagtccaagctggtgtcagcatggaacaatgtc
aaatatggctggtcgttcaagtcaaaggcccgcttcagcaagacctctcctctgaccatg
cttggacagtcttatctgctcagtcatggagtggagagggagtgctttcgccgggccttt
gccactctgctatggctgacgtacaggcggggcttcccacagctgaatggttcctctctg
accacagacagtgggtggggctgcatgctgcgcagtggacagatgctcctggcacagggg
ctactgctacacctgctgccgccaggctggacctggctctctgccaaccatgtgtccaaa
gatgacatggaggtacaggagtctcgctccttgggtccggaggtgactaagaagggaagg
aggaagagcatagtgtccttcctggagagccggacggaagttactcacagacgggtggtg
tcctggtttggggaccatcccttcgccccgttcgggctgcatcagctggtggaacagggc
acaagctcagggaagaaggcaggggactggtatggcccctccatcgtagcacacatactt
cgtaaggctgttgacgcagcatcagcagaggtgtccaatctgacagtgtatgtagcacag
gactgcactgtgtacatagatgatgtggtgaggctgtgtgagagacctctatctgagggc
tccacaggacccagtccaacctggaagtctgtcatcatcctggtccctgtgcgcctggga
ggagaagtcctcaaccccacctacatcaaatgtgtcaaaaatctcctgaggttagaatgc
tgcattggaatcattggtggcaaacccaagcactctctgttcttcgttgggtaccaagac
gaacagctgttgtgcttggacccccactacagccagtccacagtggatatcacacaggat
aacttccccttagagtcgtttcactgtaagtgtcccaggaagatctccttcagtcgcatg
gatcccagctgcactataggcttctatgccaagagccagaaagaatttgagttactgtgc
tcagctgttagcacggctctctcatcatcaacagaaaagtaccccatcttcaccattgca
gagggtcagggacaggatggggggcaggaggatgagagcaatgcacccccaaactctatc
acccacatcctgaccaaggacaaggcgaggctgagaaggaccaataacagcaacagcatg
gatgagtttgtgttattgtga
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