Oncorhynchus tshawytscha (Chinook salmon): 112226381
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Entry
112226381 CDS
T05605
Name
(RefSeq) probable ATP-dependent DNA helicase HFM1
KO
K15271
ATP-dependent DNA helicase HFM1/MER3 [EC:
5.6.2.4
]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
otw03036
]
112226381
Enzymes [BR:
otw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
112226381
Chromosome and associated proteins [BR:
otw03036
]
Eukaryotic type
Meiosis-specific proteins
Others
112226381
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
DEAD
SNRNP200_wHTH
Helicase_C
ResIII
DEXQc_Suv3
AAA_22
Motif
Other DBs
NCBI-GeneID:
112226381
NCBI-ProteinID:
XP_042163802
LinkDB
All DBs
Position
LG28:complement(32742473..32765072)
Genome browser
AA seq
1662 aa
AA seq
DB search
MLDSEECTLSLDNLFFERPVVHKVKPLCQEQSSWQLEPPPSLSQIPATQDIQKEAEDLSS
FNFSQRSKKFIPPLKRTVGSDGFIQKNTDFNQITSDGGKEPEGQGGCALWSQEDFMNKSQ
CSTMVSRGRTETPQESGHALEQKHFPLDFSQSPPVRRSLFKPLIGQVLNSGADLNTRHSQ
TRPREQQTFNQVSMATEPRLARQSAAGPSPLSGLGPAAARGPPPHTPDKGTKRANVLPMT
PQPLQIQGTSGPGILRPVSEIHAKFRSVFKEFPYFNYVQSKALDDVLYTGKNVVACAPTG
SGKTVLFELAIIRLLMETTEPWRNVKAVYMAPIKALCSQRFEDWKKKFEPLGLSCKELTG
DTEIDDFFEIQDAHIIMTTPEKWDSMTRKWRDNCLLQLVRLFLIDEVHVVKDTTRGATLE
VVVSRMKAVHAFRAAENPQEDVSMRFVAVSATIPNIKDIADWLCDNRGPATCLEMDESHR
PVKLRKVVLGFPCSSNQTEFKFDLSLNYKMANIIQTYSDQKPTLVFCSTRKGVQQSAAVL
AKDARFIMRIEHKQRLMKYANSLLDSKLRDLVTFGVGFHHAGVDVSDRKVIEEAFTMGDL
PVLFTTSTLAMGVNLPAHLVVIKSTMHYIGGACKEYSDADMLQMIGRAGRPQFDTSATAV
IMTKTHTKDKYMQFMNGAEIIESSLHTHLVEHLNAEIVLHTISDVNMALDWIRSTFLYIR
ALKNPKHYGFSTDLDRCGIEAKLQELCLKNLNSLASIGLVSMDEDVNIKATEAGRLMARY
CVAFDTMKQFSKVTGTETLPELIELMAKGREFTDVQLRVNEKRTLNTLNKDKNRITIRYP
MEGKIKNNEMKVNCLIQAQFGSIPIQEFGLTQDTGRIFRNGVRISRCLAEFLNQRSKTGF
SALLNSLILAKCFSAKLWENSPYVSKQLEKIGLTLSAAMVNAGLTTFSKIEKTNARELEL
IVNRHPPFGNQIREAIINLPKYEACLEQLPRYNVATAEIVVTVNVKNHEQLLSKRTAPDH
HYVTMILGDCDNNVVFLQKLTDLMLLKSGSWSKKIEVAKASKGEEINVNLVSSEYVGLDI
QQKFSPFFSGPKRYGAESLAPEQHNTVQQAQANAQRSQGATQRTQPTAQQTQKRNSTSTC
ATEKDSSQSDPGKRQCNHLCKNKDQCGHDCCKNGGSGVLKRQMNQHSSFTSYLQDLKTRS
DTLTETPVKRLKMRMNGGMGAANMQQFSYSPKPILPASSRYEGNQYGALARPQSVDSAED
FATPKEMAYVVTYGHEYNDYLEDISQTTGDLKPPPVQLPTLTESQSTLIWRKPNAYDGRS
VCHSTPQSQSSHSTPRARAGVTLRATAPPEPEQELPSEPQHPQSQCRSYPQSHSTPRARA
GVTLRATAPPEPEQGYPQSHSTPQSRGYSQSISQNQSRCYPQSHCTPQSRSYPQSHSTPQ
SQCRSYPLSQSTAQTQSRGNSTPQNQSRSFSQSSIVDLTDDSGFFSSSITPSVTFDLGDE
WDDFDDDNLVHANEKPCTTVAKTKGVDLDCDRPKGNSTPLPSISLLPKPRFTTSNSPLRS
TSPVVSQIPVTTLPVRPHNSQATASWSHSDNKATRTFSEPPMKAPPSFPKQTDTSLPPLG
QRFDFFSKTTTPNNDTVTGKRLQGEDYSKEVEAFMGIFDGLF
NT seq
4989 nt
NT seq
+upstream
nt +downstream
nt
atgttggactcagaagagtgtactttgtccctggataacttgttctttgagaggccagtt
gtccacaaagtaaagccactttgtcaagagcagagttcttggcagttggaaccccctcca
tccctctcccagattccagccactcaggacatccaaaaagaggcagaggatctttcatca
ttcaatttctctcagaggtccaagaaattcattccccctttgaaaagaacagtcggcagt
gatggtttcatacaaaagaacacagattttaatcaaattaccagtgatggaggaaaagaa
cctgagggccagggcgggtgtgctctctggtctcaggaagacttcatgaacaagtcccag
tgttccacaatggtcagcagaggtcgaactgaaaccccacaggagtctggtcatgcgcta
gagcagaaacattttcctctggacttcagccaaagcccacctgtacggagaagtttgttc
aaacctctcattggtcaggtgttgaacagtggcgcagacttgaacacccgccacagccag
acaagacccagagagcagcaaaccttcaaccaggtttccatggcgacagagcctcgactg
gcaagacagtcagcagcaggccccagccccctcagcgggctgggtccggctgcagcacgg
ggacccccaccgcatacaccggacaagggcaccaagagggctaacgtcctccccatgaca
ccccagccccttcagatacaaggtacttctgggcctgggatactccgaccagtctctgaa
atccatgcaaaattcagatctgtcttcaaagagttcccttacttcaactacgtccaatcc
aaagccctggatgatgttctttacacaggaaagaacgttgtggcttgtgctcctactggt
tctggtaagacagtgctctttgagttggccatcatccgcctactgatggaaaccacagag
ccctggagaaacgtcaaagctgtttatatggcccccatcaaagctctatgcagccagcgc
tttgaggactggaagaagaaattcgagcctctgggcctgagctgcaaggagctgaccgga
gacacagagatcgatgacttctttgagattcaggacgcccatatcatcatgaccacacct
gaaaaatgggacagcatgaccaggaagtggagggataactgcctgctgcagttggtccgg
cttttccttattgacgaggtgcacgtggtgaaagacactacgcgtggagcgacactagag
gtggtggtgagcaggatgaaggcggtccatgccttccgtgcagcagagaacccccaggag
gatgtctccatgagatttgtggctgtctctgccaccatccccaatatcaaggatattgca
gactggctgtgtgacaacagaggccctgctacttgtctggagatggatgagagtcacaga
cctgtgaaactgaggaaggtagtgctgggtttcccctgcagcagcaaccagactgagttc
aagttcgacctgtcactcaactacaagatggccaacatcatccagacctactcggaccag
aaaccaacccttgttttttgctcaacaaggaaaggagtccagcagtcagctgctgttctg
gccaaggatgccaggttcatcatgaggattgagcacaaacaacggttgatgaagtatgca
aactctctcctggactcaaaactcagagacctggtgacgtttggggttggtttccaccac
gccggggtagacgtgtcagacaggaaggtgattgaagaggccttcaccatgggagacctg
cctgtactgtttacaaccagtactctggcgatgggggtgaacctgccagcccacctggtg
gtgatcaagtccaccatgcactacatcggtggagcctgcaaggagtacagcgacgccgac
atgctgcagatgattggccgagcaggccggccacagtttgatacgtcagcaaccgcagtg
atcatgaccaagactcacaccaaagacaagtacatgcagttcatgaatggggcagaaatt
attgagagcagtctgcacacccaccttgtggagcacctgaacgctgagatcgtcctccac
accatctcagacgtcaacatggccctggactggatccgctccaccttcctctacatcaga
gcactgaagaaccccaaacactacggtttttccaccgacttggaccgatgtgggatcgaa
gccaaattgcaagagctctgtctgaagaacctgaactccctggcctccattggtctggtc
tccatggatgaggatgtcaacatcaaagctacagaggcaggcaggttgatggccaggtac
tgtgtggcatttgacaccatgaagcagttcagcaaggtgactggcactgagaccttacct
gagctgatagaattgatggcgaagggcagagagttcactgacgtgcagctgagagtgaac
gagaagagaaccctgaacacgttgaacaaggacaagaacaggatcaccatcaggtatccc
atggagggaaagatcaaaaacaatgagatgaaggtgaactgcttgattcaggcccagttt
ggctccattccaattcaagagtttggactcacacaagacaccggtagaatcttccggaat
ggagtccgaatcagcagatgtttggcagagtttctaaaccagcgctccaagacaggcttc
tctgctctgctcaactccctgatactggccaagtgcttcagtgccaagctgtgggagaac
tctccttacgtctcaaagcagctggagaaaatagggttgactctttcagccgccatggtg
aacgctgggctcaccaccttcagtaagatagagaagaccaacgccagggaactggagctg
atcgtcaacagacatcctccattcggaaaccaaatcagagaggctatcatcaatctaccc
aagtatgaagcttgtttggagcagcttccaagatacaacgtcgccaccgcagagattgtc
gtgactgtgaacgtgaagaaccacgaacagctgctgtcaaagagaactgctcctgaccac
cactatgtcaccatgatcctcggggactgtgacaacaacgtggtcttcctgcaaaaactc
acagacttgatgctgttgaagtcgggaagctggtcaaaaaagatcgaagtggcgaaagcc
tccaaaggagaggagatcaatgtgaatctggtcagctcagaatacgtggggttggacatt
caacagaagtttagtcccttcttctctggaccgaagaggtacggagctgaatcactcgca
cctgagcaacataacaccgtgcagcaagcacaggctaatgctcagagatcacagggtgca
acacagagaacacagccaacagctcagcaaacacagaagagaaactccacatccacatgt
gccacagaaaaggattcctcacaatcagatccaggcaaaagacaatgtaaccacttatgc
aaaaacaaggatcaatgtggccacgactgctgtaaaaatggagggtcgggggtcctgaaa
aggcagatgaatcagcattcgagtttcacctcctacctccaagacctgaagaccaggagt
gacacactgacggagacaccagtcaaacgcctcaagatgagaatgaatggcgggatggga
gctgcgaacatgcaacagttctcttattcacctaagccaatcctacctgcttcttctagg
tatgaaggtaaccagtatggcgctttagcaagaccacagagtgtagattcagctgaggac
tttgcaacacccaaagagatggcttatgttgtgacctatggccatgagtataatgactac
ctggaagacatatctcagacaacgggagatttgaaaccaccacctgttcaacttccgacc
cttacggagtcacaaagcactttaatatggaggaagcccaatgcctacgatggaagatcc
gtctgccacagcaccccccagagccagagcagccacagcacccccagagccagagcaggg
gttaccctcagagccacagcacccccagagccagagcaggagttaccctcagagccacag
cacccccagagccagtgcaggagttaccctcagagccacagcacccccagagccagagca
ggagttaccctcagagccacagcacccccagagccagagcagggttaccctcagagtcac
agcacaccccaaagcaggggttactcccaaagtatctctcagaaccagagcagatgttac
ccacagagtcactgcaccccccaaagcaggagttaccctcagagccacagcaccccccag
agccagtgcaggagttaccctctgagtcaaagcaccgcccaaacccagagcaggggtaac
agtaccccccaaaaccagagcaggtctttttctcagagttccattgtagacttgaccgac
gacagtggtttcttctcatcgtcaatcacccccagcgtgacctttgacctgggagacgag
tgggatgattttgacgatgacaacttggtgcatgccaacgagaagccatgcaccactgtt
gctaaaactaaaggggtggacctggactgtgataggccaaaaggaaactccacaccacta
ccatccatttccttactgcccaaaccccgcttcactacatccaattccccactcaggtca
acctccccagttgtttctcagataccagttactactctcccagtcagaccacacaactcc
caggctactgctagctggagccactctgacaacaaggccacaaggacattcagtgaaccc
cccatgaaagcaccaccctccttcccaaaacagactgacactagcttgccccccctggga
caacggtttgatttcttctcaaagacgactaccccaaacaatgacactgtgactggcaaa
aggctccagggagaggattacagcaaggaagtggaggcattcatggggatatttgatgga
ctattttag
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