Oncorhynchus tshawytscha (Chinook salmon): 112226393
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Entry
112226393 CDS
T05605
Name
(RefSeq) low-density lipoprotein receptor-related protein 8-like
KO
K20052
low-density lipoprotein receptor-related protein 8
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112226393
Membrane trafficking [BR:
otw04131
]
Endocytosis
Clathrin-mediated endocytosis
Low-density lipoprotein receptor (LDLR) family proteins
112226393
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ldl_recept_a
Ldl_recept_b
FXa_inhibition
cEGF
EGF_CA
SGL
EGF
Motif
Other DBs
NCBI-GeneID:
112226393
NCBI-ProteinID:
XP_042163805
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All DBs
Position
LG28:complement(34967527..35057850)
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AA seq
903 aa
AA seq
DB search
MEHSLKNNLPFSPPGKQTCPSEKFDCGGSTNKCVSLSWRCDGERDCENGADEEDCAAGNK
ACPKSQFQCANRKCLAPVFVCDGDDDCGDGSDELKCSDRHSPTNTCSPHEFRCNTSECVP
VVWSCDGDPDCPDGSDEWPQRCGGEGSHPRRRVNCTMEEFRCANGECVRLPWKCDGDPDC
KDKSDEAECPLLTCRPDEFQCGDGSCIHGTKQCNKVHDCPDQSDEAGCVNATKCEGPLKF
LCKNGECIDSAKVCDNVKDCKDRSDEPKKECGLNECSLNNGGCSHICQDRPIGYECQCPT
GYKLLDKRTCGDIDECENPNACSQICINYKGDFKCECYQGYEMDPVTKTCKAEGKSPYLL
FTNRQEIRRVDPVKRDYRQVLATQKNAVALDVDVANNRLFWCDRFHRNIYSALIPEAGDP
SQQVTLVDSGSLLSPEGLALDWVQHNLYWTDSGHKTVSVASAYDGLKRRVLVDTELSEPR
AIALDPQHGFMYWTDWGTRAKIEKAGMNGVDRQVLVSDNIEWPNGITLDVANRRLYWVDS
KLHLISSVDLNGAHRRTHLSSSERLGHPYALAVFEDRIYWTDREREAVYSANRLTGQDIS
TVAEHLKDPHDIVVFHPLRQQPGPDSCNLGSEDNGGCEYLCLKAPQITEHSPKYTCACPT
GQDLGPEMRACMPANETTTTSSPVAITTGANDKVSPHTSGLSQADAGVPHLIPAPSSTPE
PPPSSKPGVEEKEGRGLDPTADTNILVTSTTVGFVVKEDSNLSHHSGSEHFLLGENLTVA
VLGVVIPIVPIVATVIFGLLCTGVYLVWRNYRQNATKSMNFDNPVYRKTTGEGEEDEIHI
GRTDGIMGGHHGHHPYPAGVGCGVVGGGGNTCPQFIALPLGGSMPDPGTHWYTEQPMLST
TAK
NT seq
2712 nt
NT seq
+upstream
nt +downstream
nt
atggaacatagcctaaaaaataatctccctttctcccctccaggcaagcagacgtgtcct
tcggagaagtttgactgtggcggctccaccaacaagtgtgtctcgttgtcgtggcgatgt
gatggcgagcgggactgcgagaacggggcggacgaggaggactgcgccgccggaaacaaa
gcctgcccgaaaagccagttccagtgtgccaaccgcaagtgcctggcacctgtcttcgtg
tgtgacggcgatgacgactgcggcgacggctctgacgaactcaaatgctccgaccgccac
tcgccgacgaacacctgcagcccgcacgagttccgctgcaatacctcggagtgcgtgccc
gtcgtgtggagctgtgacggcgaccccgactgccccgacggctctgacgagtggccgcag
cgttgcggtggtgaaggttcacatccacgccgcagggtgaactgtacgatggaggagttt
cggtgcgccaacggggagtgtgtgaggctgccgtggaaatgtgacggcgatccagactgc
aaggataagtcagacgaggcagaatgtcccctactgacgtgcaggccagatgagttccag
tgtggggatggctcctgtatccacggcaccaagcagtgtaacaaggtccatgactgtcct
gaccagagtgatgaggctggctgtgtcaacgccactaagtgtgagggtcccttgaagttc
ctgtgtaagaacggagagtgtatcgacagcgccaaggtgtgtgacaatgtcaaggactgc
aaggaccgctctgatgagcccaagaaggagtgtgggctcaacgagtgctcactcaacaac
ggcggctgttctcacatctgccaggatcgaccaataggctacgagtgccagtgtcccacc
gggtacaagctactggacaagaggacgtgtggagacattgatgagtgtgagaaccccaac
gcctgcagccagatctgcatcaactacaagggagacttcaagtgtgaatgttaccaaggc
tatgagatggaccccgtcaccaagacctgtaaagcagaagggaagtctccctacctgctg
ttcaccaaccgtcaggagatccgtcgtgtagacccggtgaaaagggactaccgccaggtg
cttgccacccagaagaatgctgtggcgctggacgtagacgtggctaataaccgtctgttc
tggtgcgaccgcttccaccgtaacatctacagtgctctgatcccagaggcgggcgacccg
tcccagcaggtgaccctggtggactctggctctctcctctcccctgagggcctggccctg
gactgggtccaacacaacctctactggaccgactcgggccacaagaccgtctcggtggcc
tcggcctacgacggcctcaagaggagggtcctggtcgatacggagctcagcgagcccaga
gccatagcgctggatccacagcatgggttcatgtactggactgactggggcacccgggcc
aagatagagaaggcagggatgaacggggtggaccgacaagtcctggtgtcagacaacatt
gagtggcccaacggcatcaccctggacgtagccaacaggcgtctttactgggtcgactcc
aagctgcacctaatctccagtgtggacttgaacggggctcatcgcaggacacacctgtcc
tcctcagagagactgggacacccctacgcactggccgtgttcgaggaccgtatctactgg
acagaccgggagagagaggcggtgtacagcgctaacaggctaacgggccaggacatcagc
acagtggccgagcacctcaaagaccctcacgacatagtggtcttccacccgctccgccag
caaccaggcccagacagctgtaacctgggcagtgaggacaacggtggctgtgagtacctg
tgtctcaaagccccccagatcacagagcactcccccaaatacacctgcgcctgccccaca
ggacaggacctgggccccgaaatgcgtgcctgcatgccagcaaatgagaccactaccaca
tcatcacctgtggccatcaccacgggcgccaacgacaaggtctcccctcacacttctggg
ttgtcccaggcagacgccggggtgccccacctcatcccagccccctccagcaccccagag
cccccccctagctcaaaacctggggtggaggagaaggaaggccgtggtttggatcccact
gctgacaccaacatcctggtcacctccaccacagtaggcttcgtcgtcaaggaggacagc
aacctctcccaccactctggaagtgagcatttcctcctgggtgagaacctgacagtggca
gttctgggagtagtgatccccatagttcctattgttgccacagtgatcttcggcctgctc
tgcaccggcgtctacctggtttggcggaactatcgccagaacgccaccaagagcatgaat
ttcgacaaccctgtctaccgcaagaccacaggcgagggcgaggaggacgagattcacatc
ggccggacggatggcatcatgggcggccaccacgggcaccacccgtacccggccggagtg
gggtgtggcgtagtcggcgggggcggaaatacatgcccacagttcattgcgctgccacta
ggtggcagtatgcctgatccggggactcattggtacacggagcagcctatgctgtctact
acggcgaaatga
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