Oncorhynchus tshawytscha (Chinook salmon): 112226468
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Entry
112226468 CDS
T05605
Name
(RefSeq) tiggy-winkle hedgehog protein-like
KO
K11988
sonic hedgehog
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04340
Hedgehog signaling pathway
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
112226468
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
otw01002
]
112226468
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
otw00536
]
112226468
Peptidases and inhibitors [BR:
otw01002
]
Cysteine peptidases
Family C46: hedgehog family
112226468
Glycosaminoglycan binding proteins [BR:
otw00536
]
Heparan sulfate / Heparin
Morphogens
112226468
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HH_signal
Hint
Peptidase_M15_3
Hom_end_hint
Intein_splicing
Ribosomal_S6e
Vint
Motif
Other DBs
NCBI-GeneID:
112226468
NCBI-ProteinID:
XP_024246603
UniProt:
A0A8C8G3L9
LinkDB
All DBs
Position
LG28:21159667..21162908
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AA seq
412 aa
AA seq
DB search
MDMMLMSIRLALVGFICLSLVSAGFACGPGRGYGKRRHPKKLKPLAYKQFIPNVAEKTLG
ASGKYEGKITRNSERFKDLTPNYNPDIIFKDEENTNADRLMTQRCKDKLNSLAISVMNQW
PGVKLRVTEGWDEDGHHFEESLHYEGRAVDITTSDRDKNKYGMLSRLAVEAGFDWVNYES
KAHIHCSVKAENSVAAKSGGCFPGSASVLLEDGRSKLVKELEVGDKVLAADKAGHIVSSD
FLMFMDRDPVTSREFYVFETEKPNRKLRLTPAHLVFVTNNVTDGDMTAVFASNVKPGQQV
FVVDEALDHLKAVTVERIYVEEYEGSYAPVTSQGTIIVDHVLASCYAVIEDHKWAHWAFA
PVRLGHALMSLTGLVKEREEIPQRDGIDWYSDILYHIGTLLLDRNSFHPLGM
NT seq
1239 nt
NT seq
+upstream
nt +downstream
nt
atggacatgatgctgatgtcgataagacttgcgcttgtgggcttcatctgcctgtcttta
gtatccgctggcttcgcctgtggtccaggtaggggatatggaaaaagaagacatccgaaa
aaactgaagcctttggcttacaagcagttcattcccaacgtggcagagaagacccttggg
gccagtggcaaatacgaagggaagatcacaaggaactctgaaagatttaaagacctgaca
ccaaactacaatcctgacattattttcaaagatgaggaaaacactaatgctgacagactt
atgacacagagatgtaaggacaaactgaactctttggctatttcagtcatgaatcagtgg
ccgggagtgaagctgcgcgtgacagaaggctgggacgaggatggacaccatttcgaggaa
tctttacactatgaaggaagggctgtggatatcaccacctctgacagagataaaaacaag
tatggaatgttatccaggctcgcagtggaggcgggatttgactgggtcaattatgaatcc
aaagcccatattcattgttctgtgaaagcagaaaattcagttgctgcaaaatcgggtggc
tgcttcccaggatccgcctcagttcttctcgaggatggtcggagcaagctggtaaaggaa
ctggaggtgggcgacaaagtgttagctgcagacaaagcaggacatattgtatctagcgat
ttccttatgttcatggaccgagatccagtaacaagtcgagaattttatgtttttgaaacg
gagaagcccaacagaaagttaagactgacgccggcacaccttgtcttcgtcacaaataac
gttacggatggcgatatgactgcagtgtttgccagtaatgtaaaacctgggcaacaggtg
tttgtcgtggacgaggcactagaccacctaaaggcagtcaccgtggaaaggatttacgtg
gaagaatacgagggatcttatgcaccagtgacttcacaaggaaccatcatagttgaccat
gttttggcgagctgttacgcggtaatcgaggaccacaaatgggcgcactgggcctttgca
ccagtccggttgggtcacgcgttgatgtctttgacaggtctagtcaaagagcgcgaggaa
atccctcagagagatggaatagactggtactcagacattctataccacatagggacattg
ctgctggacagaaactcctttcatccccttggaatgtga
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