Oncorhynchus tshawytscha (Chinook salmon): 112226503
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Entry
112226503 CDS
T05605
Name
(RefSeq) collagen alpha-5(IV) chain-like isoform X1
KO
K06237
collagen type IV alpha
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04510
Focal adhesion
otw04512
ECM-receptor interaction
otw04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
112226503
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
112226503
09142 Cell motility
04820 Cytoskeleton in muscle cells
112226503
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
otw04147
]
112226503
00536 Glycosaminoglycan binding proteins [BR:
otw00536
]
112226503
Exosome [BR:
otw04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
112226503
Glycosaminoglycan binding proteins [BR:
otw00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
112226503
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
112226503
NCBI-ProteinID:
XP_042164143
LinkDB
All DBs
Position
LG28:complement(35877692..35952199)
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AA seq
1657 aa
AA seq
DB search
MRTALLCFALGVMLRRTEAKDCACTGKSMCHCEGVKGNKGERGCAGETGPPGSVGHPGSE
GHLGPVGPKGDVGPHGPPGTDGDRGPEGKEGFSATPGLPGIPGLQGPMGQPGSPGCNGTE
GERGPTGPAGPCDGDDGLRGLPGAPGPKGESQMLIGFGQSGRPGPRGRDGDQGVHGVTGP
TGQQGDFGTRGVVGLLGLPGIPGFKGQEGRSSSIPGSGGPKGHQGPPGFPGPKGIKLYAH
APSDLKGETGDLGEKGCKGSPGYAGQVNFKEKGDQGGIGTEGRPGKDGRQGPAGYEGRKG
NPGLAGPDGIPGPRGQKGVQGQDGDPGEVTMIGCDVIGPKGQPGFTGPPGPPGVTGPPGA
TGFQGPPGSPGPNNGGDPYNRGAKGHSGPKGDEGEPGPIIQGEPGREGSQGTTGDLGPPG
PPGESDNLKGVIGPPGAKGAKGEQGYGGQYGSKGEKGEVCSLCTGKGSGEPGPPGSPGQP
GVPGFSAGPGPKGEPGFKGPSGSPGQQGLHGPSGVPGPPGPKGNSGSCNHQGIKGEKGAP
GPAGRSGLDGLYGAPGFRGRKGQQGPKGDPYDGPLGLKGDTGVPGSPGPQGYPGPDGSPG
PVGIGPLGPSGPKGNSGVPGLPGTPGYRGQKGEPCSSVADQGVPGLPGKAGLPGTRGPPG
PRGGAGNPGEKGDSGVFSTLGRRGPTGQKGDKGQPGRPTTSGSGDPGRPGVMGFPGAQGP
KGDAGFETLGPAGPKGFPGGVGARGPPGDPGVLGRPGSLGPPGINGSSGPKGSKGVDGSQ
GPPGYAGTCCTEAPTGPPGLSGRPGLPGINGEMGLCGDPGTPGFGSSGPAGDPGPPGASG
PVVQGLTGQMGGRGRDGLPGASGPRGDPGLEGRSGPGPDGPPGPEGPPGPKGSVGPDGEK
GHSGVPGSVGDDGRPGPCGPSSDTVVHGPPGDPGKHGLPGFHGAKGHPGYPGPKGIDGRD
GDPGNGPRGCPGDPGADGLCSGGPGPSGLRGNMGLMGLPGPHGTQGGLGSNGDEGLDGRP
GPRGPKGTKGESSCAKPGLPGSPGQKGEPALNNKHDSKGMKGSPGYAGPPGSQGPSGAKG
DPGHLGAQGPAGQPGTDGPPGPPGLPASHGAPGQPGLPGLPGPYGPKGNQGHDGIPGPVG
QKGETLIVRSTPGPRGKNGLPGPKGDVGFTGPTPPGPPGCPGDQGHRGNEGPQGSRGRPG
FGGVCVNGLKGDAGSHGNPGSPGQQGPRGQPGSGGYECKGDRGDLGAPGGRGLDGPTGDL
GPSGLPGPGSIPGPPGPTGSPGHSGTPGVPGEMGDPSFNPGPKGPNGSRGPPGPPGCPGL
DVPVRPEKGDPGPPGYTGNQGPPGHSGLPGQPGLTGPPGPEGQQGHSPPGLPGFPGCKGD
KGSPGLTGPLGYRGFPGQKGPLGPRGSSTAGLADSFMLARHSQTIRVPDCPQGTALIYSG
YSLLFINGNKRAHGQDLGSIGSCLPRFSTMPFLFCDTDNTCRYAARNDYSYWLSTEKPMP
RSMDLIRGDEISSYISRCSVCEGSSNAMAIHSQTAQLPDCPGDWESLWTGYSFVMQTGAG
AEGSGQPLGSPGSCLEHFRQVPFIECHGRGTCNYFPDSYSFWLALLDPNHMFSKPVPQTV
KGPLLEEVISRCRVCRKPQSNDKSNQAQAITQNIWNI
NT seq
4974 nt
NT seq
+upstream
nt +downstream
nt
atgaggactgcgttgctttgttttgctttgggggtgatgctgcgaagaactgaggcgaag
gattgtgcgtgtactgggaagtccatgtgtcactgtgaaggagtcaaaggcaacaaggga
gaaaggggttgtgcaggagagacgggtccacctgggtcggttgggcatccaggctcagag
ggtcaccttggacctgtggggccaaagggagatgtgggccctcatggacctccaggaaca
gatggcgatcggggacctgaaggcaaagaaggattttctgcgacaccaggtctaccgggc
atcccaggccttcaaggaccaatgggccaaccaggttccccaggatgcaatgggacagag
ggtgagagaggtcctactggtccagctggtccctgtgatggtgatgatggattaagaggt
ttacctggagcacctggaccaaagggtgaatcccaaatgttaattgggtttggacagtca
gggagacctggaccccgaggaagggacggtgaccagggtgtccatggggtaacaggaccg
acaggacaacaaggggactttgggacccgtggtgtcgttggattgctaggtctacccggg
atcccagggtttaagggtcaggagggacgcagctccagtatccctggctctggtggtcca
aagggacaccaagggccccctggattcccgggacccaaagggatcaaactatatgcccac
gctccctccgatttgaagggggagacaggggatctgggtgagaagggctgtaagggttca
cctggttatgctggccaggtcaactttaaggaaaaaggggaccaggggggcattggcact
gagggaagaccagggaaagatgggcgtcaagggcccgctggatatgaggggagaaagggg
aatcccggtttagcaggacctgatggaatacctggaccgcggggacagaagggtgtccag
ggtcaagacggagatcctggggaggtgaccatgattggctgtgacgtaattggccccaaa
ggacaaccaggatttactggccccccggggccccccggagttactggtcccccaggtgcc
actggattccaggggcctcctgggtctccaggtcctaacaacggaggagatccctataat
cggggagcgaagggccacagtgggcctaaaggggatgaaggagagccaggacccatcatt
cagggagagccaggcagggaaggctcacaaggaacaactggagaccttggacccccggga
ccacctggagaatcagataatctgaagggggttatcggacctccgggggcaaagggagcc
aagggagaacaagggtacggtggccaatatggatcgaaaggtgagaaaggggaggtctgt
agtttgtgtacgggaaaaggatctggagagccgggacccccaggttcccctggtcagcct
ggagtcccaggctttagtgcaggaccaggacccaaaggagagccaggattcaaaggaccc
tcgggatcacctggacaacagggtctccatggcccttcaggtgttccaggacccccaggg
ccaaaaggaaattcaggttcctgcaatcaccaggggataaagggagagaaaggagcgcca
ggaccagctggcagatcagggctggacggcctatacggggcccctggctttcgtggacgc
aagggccaacaaggccctaagggtgatccatacgatgggccactgggtctgaagggagat
actggtgtcccaggctctcccgggccacagggatacccaggaccagacggttcaccaggt
ccagtaggcataggaccgcttggcccctcaggacctaaaggcaatagtggggtaccaggt
ctacctggtacacctggttaccgaggtcagaagggcgagccctgcagcagtgtggctgac
cagggagtcccaggcctaccgggaaaggcggggctgccgggcacacggggccccccaggt
cctcgtggtggtgctggtaacccgggggagaaaggggacagtggtgtattctccaccctg
ggaagacgaggacccactggacagaaaggtgacaaagggcagccgggccgcccaactacc
tctggaagtggcgatcctggacgacccggcgtaatgggattccctggggctcaagggcca
aagggtgatgctgggtttgagaccctaggtccagccggccctaaaggtttcccaggtggt
gttggggcccggggccctcctggagatccaggagtactgggtcgaccagggagtctggga
ccacccggcatcaatgggtcttcaggccccaaaggaagtaaaggtgtagatggttcccaa
ggacctcctggttacgcaggtacttgctgtactgaagccccaaccggaccaccagggctg
tcaggcagacctggactcccaggtattaatggagagatgggtttgtgcggggaccctggc
accccggggtttggaagctcaggtccggctggtgaccctgggccccctggggcctccgga
cccgtagtgcaaggcctcactggacagatgggaggtagagggagagacgggttaccaggt
gcatcaggtcctagaggtgaccctgggctggaaggaagatctggaccgggccctgacggc
ccacctggacctgaaggaccacccggtcccaaagggtcggttggccctgatggggagaaa
ggtcacagtggtgtaccaggctctgtgggggacgacgggcgcccaggcccttgtggacca
tcatccgatacagtcgtacatgggcccccaggggaccctgggaaacatggtctgcctggt
ttccatggtgctaaaggacaccctggatatcctggacccaaaggcattgatgggagggac
ggtgacccaggaaatgggccgagaggctgtccaggtgatcctggggctgatggactgtgc
tcaggaggaccaggcccatctggactcagaggaaatatggggctcatgggtctaccaggt
ccccatggaacacagggagggctgggttccaatggagacgaaggactagacgggaggccc
ggtccacgcgggccaaaaggaactaaaggagagtccagttgtgcaaaaccaggcctccca
ggatcacctggacagaagggcgagccagccttgaataacaaacatgactccaaaggaatg
aaaggctctcctggttacgcaggtcctccaggctcccaaggaccttctggagccaaagga
gacccaggacaccttggagcccaaggtcctgctggccaaccaggtactgatggtccccca
ggccccccaggactccctgcatcacatggagctccaggacagccagggttacctggcctt
cctggtccctatggtcctaaaggtaaccagggtcacgatggcattcctggacctgttggt
cagaagggagagacactgattgtgagatcaactcctggcccacgtggaaagaatggactt
ccaggtccaaagggagatgtgggtttcactggccccactcctccggggcccccaggatgt
ccaggagatcagggccaccgaggcaacgaaggaccccagggttctcgcgggaggccaggg
ttcggtggtgtttgtgtcaacgggctaaaaggagatgctggttcccatggcaaccctgga
agccctggacagcagggtccacggggacagccagggtctggaggctatgaatgtaaaggg
gacaggggagacctgggcgctccagggggcagaggcttggacgggcctacgggggacctc
ggaccttcagggctaccggggccaggatccatccctggacctccaggaccaaccggttcc
ccaggtcactctggaaccccaggagtccccggtgagatgggtgatcctagttttaacccc
gggccgaaaggaccaaatggatccagaggcccgccaggaccaccaggttgtccggggctt
gatgtgccagtgagacccgaaaagggggatccgggcccacccggttacaccggtaaccag
ggacctccaggtcacagtgggctgccaggacaaccaggattaacaggccccccaggccct
gagggtcaacagggacacagccctccaggcctgcctggcttccccggatgcaagggagac
aaaggatcgccaggactgacagggccgttgggctaccgggggtttccgggtcagaagggt
cctcttggcccacggggcagcagcacggcaggcctggctgacagtttcatgctggcccga
cacagccagaccatcagagtgcctgactgcccccaaggcaccgccctcatctactctgga
tactctctgctcttcatcaatggcaacaaaagggctcacggacaagacctgggctccatt
ggcagctgcctgcctcgtttctccaccatgcccttcctgttctgtgacacggacaacacc
tgtcgctacgccgcccgcaatgactactcctattggctgtccacggagaagcccatgcca
cgcagcatggacctgatcagaggagacgagataagcagctacatcagcaggtgttcagtg
tgtgagggcagctccaatgccatggccatccacagccagaccgcccagctcccagactgt
cctggtgactgggaatccctgtggactggatactcctttgtcatgcaaacgggcgcgggt
gctgaggggtcgggccagcctctgggctccccaggctcgtgtctagaacacttccgccag
gtccccttcatcgagtgtcacggccggggaacctgtaactacttccctgactcctacagc
ttctggctggccttgctcgaccccaaccacatgttcagtaagcctgtgccccagacggtg
aagggacctctgctagaggaggtcatcagtcgctgccgcgtatgcaggaaaccacaaagc
aatgacaaatccaaccaggctcaagcgatcactcaaaatatttggaacatctaa
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