Oncorhynchus tshawytscha (Chinook salmon): 112226584
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Entry
112226584 CDS
T05605
Name
(RefSeq) probable ATP-dependent RNA helicase ddx6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112226584
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
otw03019
]
112226584
03036 Chromosome and associated proteins [BR:
otw03036
]
112226584
Enzymes [BR:
otw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
112226584
Messenger RNA biogenesis [BR:
otw03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
112226584
mRNA degradation factors
5'-3' decay
Decapping complex
112226584
Chromosome and associated proteins [BR:
otw03036
]
Eukaryotic type
Gene silencing
piRNA pathway
112226584
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
Motif
Other DBs
NCBI-GeneID:
112226584
NCBI-ProteinID:
XP_024246779
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All DBs
Position
LG03:complement(8157364..8172384)
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AA seq
486 aa
AA seq
DB search
MSTARTENPTSIMGLNKPNGQFRGPLKPVGLTSGSLATAPQPDAQQKGGNIPQGSGGIRF
GDDWKKCLQLPQKDCRFRTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPVQEESIP
IALSGRDILARAKNGTGKSGAYLIPLLERIDLKKDHIQAMVMVPTRELALQVSQISIQVS
KHMGGVKVMATTGGTNLRDDIMRLDETVHVVIATPGRILDLIKKGVAKVDKVQMMVMDEA
DKLLSQDFVVLIEDIISFLAKGRQILLYSATFPISVQKFMAKHLSKPYEINLMDELTLKG
ITQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSTQRVELLAKKITQLGYSCFYIHAKM
MQEYRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRF
GHLGLAINLITSEDRFNLKSIEDQLVTDIKPIPGSIDKGLYVAEFHSADPDAEDEIRGKD
GELSAA
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
atgtctacagcaagaacggagaacccaacatccatcatgggactgaacaagcccaatggg
cagtttagaggaccactcaagccagttggactaacatcaggatccctggcaactgcccca
caaccagatgcccaacagaagggagggaacattccccagggcagtgggggtatccggttt
ggtgatgactggaagaagtgcctgcagcttccacagaaagactgcagatttagaacatca
gatgtgacatcgaccaaggggaatgagtttgaggactactgcctgaagcgggagctactg
atggggatctttgagatgggctgggagaaaccatctcctgtacaggaggagagcatcccc
attgctctgtcaggaagggacatccttgcccgggctaagaacggcaccgggaaaagcgga
gcctacctcattcctctcctggagaggatagacctgaagaaggaccacatacaggccatg
gtgatggttcctactcgagagttagccctgcaggtgagccagatcagcatccaggtgagc
aagcacatgggtggggtcaaggtcatggccaccacaggaggcaccaacctgagggacgac
atcatgcgtctggacgagactgtgcatgtggtgatagccacaccaggcaggatcctggac
ctgataaagaagggagtggccaaagtggataaagtccagatgatggtgatggatgaggca
gacaagctgctgtctcaggactttgtggtcctgatcgaagacatcattagcttcctggct
aagggtcgtcagatcctactctactctgccaccttccccatcagtgtgcagaagttcatg
gcgaagcacctttcaaagccctatgagatcaacctgatggatgagctgaccctgaagggc
atcacccagtactacgcctacgtcactgagaggcagaaagtccactgcctcaacaccctc
ttctccaggctccagatcaaccagtccattatcttctgtaactccacccagcgggttgag
ctgctggccaagaagataacccagctgggctactcctgcttctacatccacgccaagatg
atgcaggagtatagaaaccgtgtattccatgacttcagaaacggactctgcaggaacttg
gtctgcacggatctgttcaccaggggaattgacattcaagctgtgaacgtagtgatcaac
tttgacttccccaagaacgctgagacgtacctgcatcgcatcggcagatcagggaggttt
ggtcacctgggtctggccatcaacctgatcacctctgaggaccgtttcaacctgaagtcc
atcgaggaccagctggtgactgacattaagcccatccccggcagcatcgacaagggtctg
tacgtggcggagttccactctgccgacccagacgcagaagacgagatcagaggcaaggac
ggcgagttaagcgcagcataa
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