Oncorhynchus tshawytscha (Chinook salmon): 112226684
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Entry
112226684 CDS
T05605
Name
(RefSeq) protocadherin-8-like
KO
K16499
protocadherin delta 2
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
otw04515
]
112226684
Cell adhesion molecules [BR:
otw04515
]
Cadherins
Protocadherins
112226684
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_CELSR2_9th
TMEM154
Motif
Other DBs
NCBI-GeneID:
112226684
NCBI-ProteinID:
XP_024246931
LinkDB
All DBs
Position
LG28:complement(10668347..10672428)
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AA seq
1006 aa
AA seq
DB search
MGMRGWNWWVLVCTSLAVLPALTEGKTVKYETFEEDAPTTVIGNLAKDISISPSSGSKTN
FRMMKQFNSSFIRLRESDGQLTIGERIDRERICKHTLHCLIAFDVVSFSKEQFKLIHVEV
EVKDINDNSPEFPRKESSLEISENTAVGTRIPLDFAVDEDVGLNYIQSYQISVNSHFTID
VLSRADGVKYAELVLMKELDRETQASYALELVAMDGGNPSRTGTTRINVKVKDYNDNSPV
FDRNNFSVDLPEDAPVGFLLLDLNAEDPDEGLNGEVVYGFGNQVPSEIRQLFRVDRKTGR
LTLESPIDFESKKTYEFDVQATDLGPNPSPAICKIVVQVQDVNDNAPEISITPMTSITAG
IAYITESAARESFVALVSTSDRDSGANGQVHCTLYGHDHFRLQQAYEDSFMIVSTSPLDR
EQIPEYNLTVVAEDLGSPPFRTITQYTIRLMDENDNAPVFSKPVYEVAVVENNAPGAYIT
TVVARDMDLGHNSKVSYKLADAYVMGSPVSAFVSLDPASGSLYALRSFNYEVMKQLELRI
TASDGGSPPLTGTATVNIRIVDQNDNAPVINQPVLNNGSAEVLLPRDAPSGYVITRVEAQ
DADEGLNAELSYRLAFGEASVFSINKATGEVYLNRVLSHGVDETLRVTVTVSDNGRPALT
TAATLHFLIIAGAPPSDRTVYRAGSREAGEHTQWDLSVVIIIVLAGSCTLLLLAIILIAT
TCNRRKRDKTGDDTDSYGEKETLERGKNNGDNPLLPLHGVVGGFEAHTFSSQPGFAGEHT
GSSDLCSASEDGSEAPCVYEPDSKPKGYSTLPGYGNGYNNGKEVVRPITIWKGNSYTTIS
ARDPAFSGKDSGKGDSDFNDSDSDISGTDLKKEGALVPPMGGQSGLWACTSECKILGHSD
RCWSPSTVHANTGPSPVPTPTGQTLSSFNSLSKTASLPRDSLRRDNYYQAHIPKTTGLQS
VYEKVLHREYDYVLVTPPIPMRVQEISEITIPVYGPTTTRCPSNEV
NT seq
3021 nt
NT seq
+upstream
nt +downstream
nt
atgggaatgagagggtggaattggtgggtgctggtgtgcacctcgctggctgtcctgccc
gctctcacggagggaaagacggtgaagtatgagacatttgaggaggacgccccgacgact
gtcatcggaaacttggccaaggacatttcaatcagcccctcctcgggctccaagacaaat
ttcaggatgatgaagcagttcaactcgtcttttatccgtttgagggagagcgacggccag
ctgactatcggagagagaattgacagagagagaatttgcaaacacacccttcactgcctc
atcgcatttgatgtggtcagcttctccaaagagcagttcaaactcatccacgtcgaggtg
gaggtcaaggacatcaacgacaattcccccgagttcccccggaaagagtcgagtctggag
atctccgaaaacacagctgtgggcacgcggatcccgttagacttcgctgtggatgaggac
gtgggtttgaattacatccagagctaccagatatccgttaacagtcacttcaccatagat
gtgctcagcagagccgacggggttaaatatgcggagcttgtgctcatgaaggagctggac
cgtgagacacaggcttcctatgcgctcgagctggttgctatggatggtggcaacccgtcc
cgcactggaacgactcgcatcaacgtcaaggtgaaagactacaatgacaacagcccggtg
ttcgacaggaacaatttctcagtcgacctccctgaggacgcaccggtagggtttctctta
ctggacctgaacgcagaagacccggatgaggggctgaatggggaggtggtgtatgggttc
ggtaaccaggtgccatcagagattcgacaacttttcagagtggatcgcaaaacgggacgc
ctcacccttgagagccccattgactttgaaagcaaaaaaacgtatgaattcgacgtccag
gcgactgacctgggtccaaacccgagcccggctatctgtaagatagtggtgcaggtgcag
gacgttaacgacaacgcgccagagatctccatcacgcctatgacctccatcacggcggga
atcgcctatatcacggagtctgcggcacgcgagagttttgttgctctagtcagcacctcg
gacagggactctggtgctaacggacaggtgcactgcacgctctacggccacgaccacttc
aggttacagcaggcgtacgaggacagcttcatgatcgtgagcacaagcccgttggaccgg
gaacaaatccccgagtataatctaacagtggtggcagaggacttgggttccccaccattc
cggaccatcacccagtacaccatccggttaatggatgagaatgacaatgcccctgtgttc
agtaagccggtgtatgaagtggctgtggtggagaataacgcaccgggtgcttacatcacc
acggtggtcgccagggacatggacttgggccacaacagtaaggtgagctacaagctcgct
gacgcctatgtcatgggctctccagtgtccgcttttgtctcactggaccccgcgagtggc
tccctttatgcactcaggagcttcaactatgaagtcatgaaacagctcgagctccgcatc
acagccagcgacggtgggtccccgcctctcaccggaaccgcgaccgttaacattaggata
gtggaccaaaacgacaacgcacctgtcatcaaccagcccgtgctcaataatgggtccgcg
gaggttctgctgccccgggatgcgccctcaggctacgtcatcacccgggtggaggcgcaa
gatgctgatgagggcttgaatgcagagctgtcctacagacttgcctttggagaggcatcc
gtgttctccattaacaaagccaccggagaggtctacctcaaccgcgtgctcagtcacggc
gtggacgagaccctgcgcgtgaccgtcacggtgagtgacaacgggagacctgcgctcacc
accgccgccacgcttcacttcctcatcattgcgggcgcccctccgagcgacaggaccgtg
taccgggcaggcagcagggaggcaggggagcacacacagtgggacctgtcagtggtaatt
atcatcgtcctcgcggggagctgcacgctcctgctgttagccatcatcctcatcgccacc
acctgcaaccggcggaaacgggacaagactggagatgacactgactcatacggggagaag
gagactctggaaagaggcaaaaacaacggcgacaaccctctgctgccgctccacggagtc
gtgggagggtttgaagcccacaccttctcgagccagcctggttttgccggggaacacact
ggtagcagtgacctgtgctccgcctcagaagatgggagcgaggccccgtgcgtctacgaa
ccggacagcaaacccaagggctactccactctgcccggctacggaaacggctacaataac
ggtaaagaagtggtcagaccaatcaccatctggaagggcaactcctacaccaccatctcc
gcaagagaccccgcattcagcgggaaggacagcgggaaaggcgacagtgactttaacgac
agcgatagtgacatcagtggcaccgacctgaagaaggagggagcactggtaccccccatg
ggtggccagagtggtctatgggcgtgtaccagtgagtgtaagattctgggtcattctgac
cgctgctggagcccttccactgtccacgctaacaccggtccctcgcccgtccccaccccc
accggccagactctctcctccttcaacagtctctccaagacggcctcgctgccccgagac
tcgctccggcgggacaattattaccaggcgcacatccccaaaacaaccggcctgcagagt
gtgtatgagaaggttctgcatagagaatatgactatgtcctggtcactcctcccataccc
atgagagttcaggagattagtgaaatcactatcccagtctacggtccgaccaccacacgg
tgtcccagcaatgaagtctag
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