Oncorhynchus tshawytscha (Chinook salmon): 112226706
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Entry
112226706 CDS
T05605
Symbol
acin1a
Name
(RefSeq) LOW QUALITY PROTEIN: apoptotic chromatin condensation inducer in the nucleus
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03013
Nucleocytoplasmic transport
otw03015
mRNA surveillance pathway
otw03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112226706 (acin1a)
09122 Translation
03013 Nucleocytoplasmic transport
112226706 (acin1a)
03015 mRNA surveillance pathway
112226706 (acin1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
otw03019
]
112226706 (acin1a)
03041 Spliceosome [BR:
otw03041
]
112226706 (acin1a)
Messenger RNA biogenesis [BR:
otw03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
112226706 (acin1a)
Spliceosome [BR:
otw03041
]
Complex C
Other components
EJC/TREX
112226706 (acin1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RSB_motif
SAP
Motif
Other DBs
NCBI-GeneID:
112226706
NCBI-ProteinID:
XP_042164109
LinkDB
All DBs
Position
LG28:11464816..11498052
Genome browser
AA seq
1950 aa
AA seq
DB search
MADLEDVTLDGRPLQSLRVADLKAALEERGLPKSGQKNALIKRLKGALMLENLQRTSHHH
IGLQPNSQIGEEMSQNSFIKQYLAKQQELLRQRLEKEAREAVEDDDTDQEDHTQGNNSSA
CAAPDQDDVPVLVDQHKPLGPSEGEGLAGPASEGEGHRAKDGHVPGPLASTSPTSAPAAV
ASLSVCVADGEQRPERVQTSSQVPADSDDDSDGGDEDGEDEDWDSGARRRNLGEPPRGQL
ARERSEGSRQPPQHIPPLLSPQLRQPTPPPSPPPELSFPLPDTPKQSPPSPGELPARQRT
SSTSSSGSSSSGSRSSSPEPQSNAERKPGPLTLLARKMASEGAFSGVGWHGRGEAERQDN
NAATATIFPGRGPQEGTVSAITHTANAAASLPFPSLVPVTNQGVLGGHLSHSQVPVSVLR
PTIMEERDSAWQQENKERELQAESEREKALEQERLRAVELERQRIFEQERERALEREREE
REKALDAERKERERALEREREKALEAERKERARALERERAQALEQEREEREKALEEEREK
SVARERALELEKAVELERQRAMEREQALQQEREEMERAKAFEREERERALEREQVLEQER
VETARALEQERVEMEKALERERQERERALEREQLEREKALEMERIERENALEQERVEKEK
ALELERQEALELERQEALELERQKALELERQKALELERQKALELERQKALELERQKALEL
ERQEALELERQEALELERQEALELERQEALELERQEALELERQEALELERQEALELERQE
ALELERQTALELERQTALELERQKALELERQKALELERQKALELERQTALELERQKALEL
ERQKALELERQKALELERQKALELERQKALELERQKALELERQKALELERQKAAERQKAL
ELERQKALELERQKALELERQKALELERQKALELERQKALEQERVEKEKALELERQKALE
RELEEREKDREEKARALHQERIEREKERVERGKALEREREEKERALEQKALQREKEERES
VFEQDKERAMVAERESHLPPWKRGREIGLTPLPTPPLSTGAGRMAATEEGGEPHMPSLPQ
TASRDNQPVESGTPLSPTIATPLSPQSSFKKFRFLRDPPVLSPSCSASLVIKRPRTFSDS
PHTQASALQSPRKPGEQEQESTLQGSKLSSGQAASQMPARQGFLVSGPTAADTSDTTGPE
TPVIATLGKSPEEEKAEELVSEEHVLADKETNKQEVGEIARGAKRVDAGNVPSGPAESVI
PPSPPLEEGNVDRGRERSQKKQEKRGRRASSSSDSSDSDSGSSSSRSSGSSSSSQGKTRT
TPSGRKPEKPQTKTISQDKETVSQLEESKESTKAPQRKNRVPGEKDMTIDGARHGKKSFV
GIPAGQDNEQKDSEGEEEMTDTTREVKEAAMAEPERAPESSEESLTPKAFTARRISLSSS
KASPGVVSAEGEAESGAGPGRKRRWGSSTAVTAKKPSISITTDSLKSLIPDIRLSPGQEA
VVDLHPEEAHLSGGEEDREQGEQDFKIRRTVTQVVLSETQENGPKESKRSENMEDREDGV
EVKSDREEKMDDSFQRDSMETQSPSPPIHDMEMNTVTPSDTLIRRSISQQKSGVSITIDD
PVRTAKQPSPPRGKVSNIVHLSNLVRPFTLGQLKELLSRTGTVLEDGFWIDKIKSHCYVT
YSSAEEAVATRAALHGVKWPQSNPKFLCVDFSQQEELDFHRGLPPPGGAGEDERGASSVP
GRGRGAALPPLLPERDQWAEREREMERRERTRAEREWDRDKVRDFGPGKPGEDAGPRRSR
SRERKRKERKTDKKEKAAEEAPAKLLDDLFNKTKAAPCIYWLPLTEEQFTQREVARQERR
KEREKRRKEQQEEEEKKREEERKERIKASGERGEGDRDRERDRERGKDRDRDREGDKHRE
SSHRRPGGNSAGVGRRSHSRSDPPPRDRRR
NT seq
5853 nt
NT seq
+upstream
nt +downstream
nt
atggcggacctcgaagacgttacactggacgggaggccgctacaatctctacgggtggcg
gatttgaaagctgctttggaggagcgggggcttcctaaaagcggacagaaaaatgctctc
attaagaggctcaaaggggctctcatgctggagaacctccagagaacctcacaccatcac
ataggactgcagccaaactcccagattggtgaagagatgagccagaatagcttcattaag
cagtatctggcaaaacagcaggagctcttgaggcagcgtcttgagaaagaggcccgggaa
gcagtcgaagatgatgataccgaccaagaggaccacacacagggcaataacagctctgcc
tgtgctgccccagaccaggatgacgtacctgttttggttgaccagcacaagccacttggc
ccctccgagggagagggactagcaggccccgcaagcgagggagagggacacagggccaaa
gacggccatgtgcctggtccacttgcctctacctctcctacctctgcccctgctgccgtt
gcttctctgtctgtgtgtgtagctgatggtgagcagcgaccggagagagtccaaacctct
agccaagtcccagcagatagcgatgatgacagcgacggaggtgacgaggatggcgaggat
gaggactgggatagcggtgccaggaggaggaatctaggagagccaccaagaggccagcta
gcaagagagaggtctgaaggatcccgccaacccccacagcacatcccccccctgttgtct
ccgcagcttcgacagcctacccctcccccgtcccctcccccagagttatcattcccactg
cctgatacccctaaacaaagcccccctagtccaggtgagctcccggctaggcagcgtact
tccagtacctccagctctggctcctctagcagtggcagtcgtagtagcagtccagaacca
caaagcaacgcagagcgcaagcctggcccactgaccctgctggcacgcaagatggcatca
gaaggcgccttctctggagttgggtggcatggacgtggggaggcagaaaggcaggacaac
aatgctgcaactgcaacaatatttcctggtagaggtcctcaagagggcacagtgtctgcc
atcacccacacagccaatgctgcagccagtttgcccttccccagtctggttccagttacc
aaccagggtgtccttggaggccatctatcccacagtcaagttcctgtgagtgtccttagg
cccactataatggaagagagagattctgcatggcaacaagaaaacaaggaaagggagctg
caggcagagagcgaaagagaaaaggcccttgagcaagagagacttagagccgtggagctg
gaaagacagagaatatttgagcaagagagggaaagagctttggagcgagagagggaggag
agggagaaagccttggacgctgaaaggaaggagagggaaagggctttggagcgagagagg
gagaaagccttggaggcagaaaggaaggagagggcaagagctttagagcgagagagggca
caagctcttgaacaagagcgggaggaaagagagaaagctttggaagaagagagagagaag
tctgtggcaagagagagggcccttgagcttgagaaggctgtggagttagaaaggcagaga
gccatggaacgagagcaagctttgcagcaagagagagaggagatggaaagagctaaagct
tttgagcgggaggagagggaaagggctcttgagcgggagcaagttcttgaacaagaaagg
gtggagacagcgagagcgttggagcaagaaagggtggagatggagaaagccttggagcga
gagagacaggaaagagagagagccttggagcgagaacagttggagagggagaaagcattg
gagatggagcgtatagagagggaaaatgctttggagcaagagcgagttgagaaggagaaa
gctctggagctagagaggcaggaagcgctggagctagagaggcaggaagcgctggagcta
gagaggcagaaagcgctggagctcgagaggcagaaagcgctggagctcgagaggcagaaa
gcgctggagctcgagaggcagaaagcgctggagctcgagaggcagaaagcgctggagctc
gagaggcaggaagcgctggagctcgagaggcaggaagcgctggagctcgagaggcaggaa
gcgctggagctcgagaggcaggaagcgctggagctcgagaggcaggaagcgctggagctc
gagaggcaggaagcgctggagctcgagaggcaggaagcgctggagctcgagaggcaggaa
gcgctggagctcgagaggcagacagcgctggagctcgagaggcagacagcgctggagctc
gagaggcagaaagcgctggagctcgagaggcagaaagcgctggagctcgagaggcagaaa
gcgctggagctcgagaggcagacagcgctggagctcgagaggcagaaagcgctggagctc
gagaggcagaaagcgctggagctcgagaggcagaaagcgctggagctcgagaggcagaaa
gcgctggagctcgagaggcagaaagcgctggagctcgagaggcagaaagcgctggagctc
gagaggcagaaagcgctggagctcgagaggcagaaagctgctgagaggcagaaagcgctg
gagctcgagaggcagaaagcgctggagctcgagaggcagaaagcgctggagctcgagagg
cagaaagcgctggagctcgagaggcagaaagcgctggagctcgagaggcagaaagcgctg
gagcaagagcgagttgagaaggagaaagctttggagctagagaggcagaaagctttagag
cgggaactggaggagagggagaaagatagggaggagaaggcaagggctttgcaccaagaa
agaattgaaagggagaaagaaagagtggagaggggaaaagctttggaacgtgagagagag
gagaaggagagggctttagaacagaaggccctgcagagagaaaaagaagagagggagagt
gttttcgaacaagataaggaaagggctatggtggctgagagggagagtcatcttccccca
tggaaacgtggtcgtgagattggtcttacccccctgcccactcctcccctttccacagga
gcaggtagaatggcggcaacagaggagggtggggagccccacatgccatccctaccccaa
acagcatcgagagacaaccagccagttgaatctggtacgcccctgtcaccaactatagca
acgcctctgtcaccccagtcctccttcaagaagttccgtttcttgagagaccccccagtt
ctgtccccatcttgctctgcatccctggtcatcaagaggccccgtacattctctgacagc
ccccatactcaggcctccgctctccagtccccaagaaaacctggggaacaagagcaggaa
agtactctgcaggggtccaagctttcttctggacaggcagcatcacagatgcctgcaaga
caggggttccttgtttctggaccaactgcagcagacacgtcagacacgacagggccagag
accccagtgattgccacactaggcaagagtcctgaagaagaaaaggctgaggagcttgta
tcagaggagcatgtcttagcagataaggagacaaacaaacaggaagtgggagagatagcc
agaggtgctaaacgggtggatgcaggaaacgtcccctcgggtccagctgaatctgtgata
cctccctcacctccactggaagagggcaatgtagaccggggaagggagagaagtcaaaag
aaacaagagaagcggggaagacgagcttcctcatctagtgactcctcagattctgactct
gggtcatcctcctcacgctcgtctggttcatcttcgtcttcgcagggcaaaactcgcacc
actcccagtggtagaaagcctgagaaacctcagacaaaaaccatatcccaggataaggag
acagttagtcaacttgaggagtcaaaggagtccacgaaagcaccccagcgcaaaaatcga
gtacctggggagaaggacatgaccattgatggagccagacatggcaagaaatcgtttgtt
ggaatacctgctggacaagacaatgagcagaaggacagcgagggagaggaggaaatgaca
gacactacaagggaggtgaaggaggctgccatggctgagcctgagcgggctcctgagagc
agtgaggagagtctgacgccaaaggcattcacagcccgtaggatctccctgagcagcagc
aaggcctctccaggtgtcgtcagtgcagagggcgaggcagagtctggggccggccccggg
aggaagaggaggtggggttccagcactgcggtcacagccaagaaaccatccatcagcatc
accacagactctctgaagtctctgatcccagacatcaggctgagtccaggacaggaggcg
gtggtggatctgcacccagaggaagctcacctctctgggggagaggaggacagggagcag
ggcgagcaagacttcaagatcagacgcacggtcacacaggtggttctgtccgagacccag
gagaatggaccgaaggagtccaagaggagtgagaacatggaggacagagaggatggagtg
gaggttaaaagcgacagagaggagaagatggacgactcattccagagagactccatggag
acacaatccccctctccccccatccatgacatggagatgaacacagtgaccccaagtgac
accctgatccgtcgctccatcagccagcagaagtctggcgtgtccatcaccatagacgac
cctgtccgcacggccaagcagccctctcctccacgaggcaaagtgtccaacatcgtccac
ctgtccaacctggttcggccgttcaccctgggtcagttgaaggagctgctcagcaggact
ggcaccgtgctggaggacggcttctggattgacaagatcaaatctcactgctacgtcacc
tactctagtgcagaggaggcagtggccactcgtgcagcactacatggggtgaaatggcct
cagagcaaccccaagttcctctgtgtggacttcagtcagcaagaggagcttgacttccac
agaggcttgccaccccctgggggggctggagaggacgagcggggggcttcatcggtgcct
ggccgaggtcggggggcggccctgccccctctcttgcccgagcgtgaccagtgggcagag
cgagagcgtgagatggagcgcagggagaggacccgggcggagagggagtgggacagggac
aaggtccgggactttggtcccggaaaacctggagaggatgcgggccccagacgatcgcgc
tccagagagaggaagcgcaaggagaggaagacggacaagaaagagaaagctgcagaggaa
gcccctgccaaactgctggatgacctgttcaataaaaccaaagcagccccttgtatatac
tggctccccctcacagaagagcagtttacacagagggaagtagctcgacaagagaggagg
aaggagcgagagaagaggaggaaggagcagcaagaggaggaggagaagaaaagggaggaa
gagcgcaaagaaaggataaaagcatctggcgaaagaggcgagggggacagggacagagag
cgagacagggaaaggggcaaagacagggaccgagacagagagggtgacaaacacagagaa
agcagccaccgcagaccagggggcaacagtgcaggggtgggcagacgctctcacagccgc
agtgatcctccacctcgtgacagacgacgctag
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integrated database retrieval system
