Oncorhynchus tshawytscha (Chinook salmon): 112226726
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Entry
112226726 CDS
T05605
Name
(RefSeq) coatomer subunit alpha
KO
K05236
coatomer subunit alpha
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112226726
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
otw04147
]
112226726
Membrane trafficking [BR:
otw04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
112226726
Exosome [BR:
otw04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
112226726
Exosomal proteins of bladder cancer cells
112226726
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
COPI_C
B-prop_COPA_B_2nd
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
WDR55
Beta-prop_EML_2
TPR_COPA_B
Beta-prop_WDR90_POC16_2nd
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML
Beta-prop_EIPR1
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
ANAPC4_WD40
WD40_RFWD3
WD40_MABP1-WDR62_1st
WD40_MABP1-WDR62_2nd
Beta-prop_SCAP
Beta-prop_SPT8
Beta-prop_DCAF4
Beta-prop_IFT140_1st
NBCH_WD40
Beta-prop_RIG_2nd
Motif
Other DBs
NCBI-GeneID:
112226726
NCBI-ProteinID:
XP_024247007
LinkDB
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Position
LG28:11947056..11973638
Genome browser
AA seq
1223 aa
AA seq
DB search
MLTKFETKSARVKGLSFHPKRPWILASLHNGVIQLWDYRMCTLIDKFDEHDGPVRGIDFH
KQQPLFVSGGDDYKIKVWNYKLRRCLFTLLGHLDYIRTTFFHHDYPWILSASDDQTIRIW
NWQSRTCVCVLTGHNHYVMCAQFHPSEDLVVSASLDQTVRVWDISGLRKKNLSPSAVETE
VRGISGVDLFGASDAVVKHVLEGHDRGVNWAAFHPSMPLIVSGADDRQVKIWRMNESKAW
ELDTCRGHYNNVSCAVFHPRQELILSNSEDKSIRVWDMSKRTGVQTFRRDHDRFWVLGAH
PNLNLFAAGHDSGMLVFKLERERPAYAVYGNMLYYVKDRFLRQLDFSSSKDTAVMQLRSG
SKFPVFSMSYNPAENAVLLCTRATNLENSTYDLYSIPKESDSQNPDAPEGKRSSGLTAVW
VARNRFAVLDRMHSLLIKNLKNEIVKKVQVPSCEEIFYAGTGSLLLRDADGVTLFDVQQK
RSLATVKIAKVKYVVWSADTSHVALLAKHAIMICNRKLESLCSIHENIRVKSGAWDESGV
FIYTTSNHIKYALTSGDHGIIRTLDLPIYVTRVRGNSVYCLDRECRPRVLNIDPTEYRFK
LALVNRKYEEVLHMVRNAKLVGQSIIAYLQKKGYPEVALHFVKDEKTRFSLALECGNIEV
ALEAAKALDERGCWERLGEAALLQGHHQVVEMCYQRTKNFDKLTFLYLITGNLAKLRKMM
KIAEIRKDMSGHYQGALYLGDVSERVRILKNCGQKSLAYLTAATHGMDEEAEALKETFDP
EKDTVPEVDPNAQLLQPPPPINPLDTNWPLLTVSKGFFEGAIAAKGKAGQMAADMDVDAP
GGEGWGEDAELQLDEDGFMDAQDGLGEEGGATKEEGGGWEVEEDLDLPPELELPAGAGVG
AEDGFFVPPTKGMSPTQLWCNNSQLPVDHVLAGSFETAMRLLHDQVGVVQFGPYKQLFMQ
TLSRGRTCYLGLPSLPCLRGNPQRNWKDCGAKQGLPAVGLRLSDLIARLQQCYQLTTAGR
FEEAVERFRTILLSVPLLVVDNKQEIAEAQQLITICREYIVGLTMETERKKLPKDTLDQQ
KRLCEMAAYFTHCSLQPVHMVLVLRTALNLFFKLKNFKTAASFARRLLELGPKPEVAQQT
RKILAACEKTLTDAHQLNYDPHNPFDLCAASYTPLYRGRPVEKCPLSGACYCPPYKGQVC
RVTQVTEIGKDVIGLRVSPLQFR
NT seq
3672 nt
NT seq
+upstream
nt +downstream
nt
atgttgaccaaattcgagacgaagtcggcccgtgtgaaagggctgagtttccaccctaag
cggccctggatccttgctagtcttcacaatggagtcatccagctgtgggactatcgaatg
tgcacactgattgacaagttcgatgaacatgatggccctgtcagaggaattgatttccac
aagcagcagcctctttttgtgtctggaggtgatgactacaaaatcaaggtgtggaactac
aagctgcggcgttgcctcttcactcttcttggacacctggactacatccgcaccaccttc
ttccatcatgactatccctggattctgagtgcctcagatgaccagaccatccgcatctgg
aactggcagtccaggacatgcgtgtgtgtcctgacagggcataatcactatgtgatgtgt
gctcagttccacccatctgaggacctggtggtgtcggctagcctggaccagactgtgcgc
gtgtgggatatctctggtctgaggaagaagaacctctctcccagtgccgtggagactgag
gtgcgaggcatctctggcgtcgatttgttcggcgcttccgatgccgtcgtcaaacacgtg
ctcgagggtcacgaccgtggggtcaactgggccgccttccatcccagcatgcctctcatc
gtctcaggggctgacgaccggcaggtcaagatctggaggatgaacgagtccaaggcatgg
gagctggacacctgcaggggccactacaacaacgtgtcctgtgctgtcttccacccccgc
caggagctcatcctttccaactccgaggacaagagcatccgtgtgtgggacatgtccaag
aggactggcgtccagaccttccgcagggaccacgaccgcttctgggtgctgggcgctcac
cccaacctcaacctatttgctgccggtcatgacagtggtatgctggtttttaagctggag
cgtgagcgtccggcctacgctgtgtacggaaacatgctctactacgtcaaggaccgcttc
ctgcgacagctcgacttcagcagcagcaaggacactgccgtcatgcagctccgcagtggg
tcaaagttcccagtgttcagcatgtcttacaaccccgcagagaatgctgtcctgctctgc
actagggcaactaacctggagaacagcacctatgacttgtactccatccccaaagagagc
gactctcagaatccagatgctcctgaggggaaaaggtcctctggtctgactgcagtctgg
gtcgccaggaaccggttcgctgttctggaccgcatgcactcgctgctgatcaagaacctg
aagaatgagattgtgaagaaggtacaggtacctagctgcgaggagatcttctatgccggg
acgggctccctgctgctgcgcgacgcagacggagtcaccctctttgacgtgcagcagaaa
cgctcgctggccaccgtgaagatcgccaaggtcaagtatgtggtctggagcgccgacacc
agccatgttgccctgctggctaaacacgcaattatgatctgcaacaggaagctggagagt
ctttgcagcatccatgagaacatccgtgtgaagagtggagcctgggatgagagtggagtc
ttcatctacaccacctccaaccacatcaaatacgccctcacctcaggtgatcatggtatc
atccggactctggatctgcccatctacgtgacccgggtcagaggcaacagtgtctattgt
ctcgaccgtgagtgcaggccccgtgtgctgaacattgaccccacggagtaccgcttcaaa
ctggccctggtcaaccgcaaatatgaggaggtgctgcacatggtgcgtaacgccaagctg
gttgggcagtccatcatcgcctacctgcagaagaagggctatccggaggtggccctgcac
ttcgtcaaggatgaaaagacccgcttcagtctggctttggagtgtggaaacattgaggtg
gcgttggaggccgccaaggctctggatgagaggggctgctgggagcggctgggtgaggcg
gcgctgctgcagggtcaccaccaggtcgtggagatgtgctaccagaggaccaagaacttc
gacaagctcaccttcctctacctcatcaccggcaacctggccaagctacgcaagatgatg
aagatagctgagatcagaaaggacatgagtggacactaccagggtgctctgtatctgggg
gacgtcagcgagagagtccgcatcctgaagaactgtggccagaagtcactggcatatctg
actgctgccacccacgggatggacgaagaagcggaagccctgaaagagacctttgaccca
gaaaaggacactgtccctgaggtggaccccaatgcccagctgctgcagccgccacctccc
atcaaccccctggataccaactggcccctgctcactgtgtccaagggcttctttgaagga
gccattgcagccaaggggaaggctggtcagatggctgcagatatggatgttgatgcccca
ggaggagagggctggggagaggatgcagagcttcagctggatgaggatggtttcatggat
gcccaggatggattaggggaagaaggaggtgccacgaaggaggagggaggaggctgggag
gtagaggaggatctggacctgcctccagagctggagttgccagctggtgccggagtaggg
gctgaagatggtttctttgtccctcctaccaagggcatgagccccacccagctgtggtgc
aacaactctcagctccctgtggaccacgtcctggctggttcctttgagaccgccatgagg
ttgctccatgaccaggttggggtggtgcagtttgggccctataagcagctgttcatgcag
actctatcccgcgggaggacatgctacctgggcctgccgtctctgccctgcctgcgtggt
aacccgcagaggaactggaaagactgtggggccaagcaggggctgcccgctgtgggtctt
cgtctctcagatctcattgcccgcctgcagcagtgctaccagctcaccactgccggccgc
ttcgaggaggccgttgaacgcttccgcaccatcctgctgtctgtgccactgctggtggtc
gacaacaagcaggagattgcagaggctcagcagctgatcacaatctgcagagaatacatt
gttggcctcaccatggaaacggaaaggaaaaagttgcctaaagacacattggaccagcag
aagaggctgtgtgagatggcagcttacttcacccactgcagtctccagccagtccacatg
gtccttgtcttacgtacagcactaaatctattctttaaactgaagaacttcaagacagct
gccagttttgcccgtcgtctgcttgaactaggacccaaaccagaggtggcacagcagaca
cgcaagatcttggcagcatgcgagaagacgctgactgatgcccaccagctgaactacgac
ccccacaatccatttgacctgtgcgctgcctcgtacacgcccctgtaccgtggacgccca
gtggagaagtgccccctctctggggcctgctattgccccccctacaagggccaggtctgc
agagtcacacaggtgactgagatcggaaaggatgtgattggtctgcgtgtcagccctctg
cagtttcgttag
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