Oncorhynchus tshawytscha (Chinook salmon): 112226804
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Entry
112226804 CDS
T05605
Symbol
rb1cc1
Name
(RefSeq) RB1-inducible coiled-coil protein 1 isoform X1
KO
K17589
RB1-inducible coiled-coil protein 1
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
112226804 (rb1cc1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
otw01009
]
112226804 (rb1cc1)
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112226804 (rb1cc1)
03029 Mitochondrial biogenesis [BR:
otw03029
]
112226804 (rb1cc1)
Protein phosphatases and associated proteins [BR:
otw01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
112226804 (rb1cc1)
Membrane trafficking [BR:
otw04131
]
Autophagy
Autophagosome formation proteins
ULK complex
112226804 (rb1cc1)
Mitochondrial biogenesis [BR:
otw03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-independent mechanism factors
112226804 (rb1cc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATG11
TBK1_ULD
Motif
Other DBs
NCBI-GeneID:
112226804
NCBI-ProteinID:
XP_024247133
LinkDB
All DBs
Position
LG28:15249166..15266795
Genome browser
AA seq
1634 aa
AA seq
DB search
MKLYVFQVNNGSTLAFDTELAVQTVLDLKHAIQVKYKIATQHQVLVVNGGECMVAERRVC
SYSAGTDTNPIFLFNKEMILCDRAPTIPKTTFSIENEMELKVEESLMMPAVFHTVASRTQ
LAVEMFEVAKKLCSFCERLVHDEHLQHQGWAAIMANLDDCTLSYQKLLWKFDTAYINYQQ
EFEDIKLKLTKLGTAVSVMANIPLLECLTRHSYKECIEKSCSTPNKDSDETEEEKSTDSV
LCPSPTKLPASFSAPGAGDSPDTAEAQESSEMTDSSGLRAALQEADSPERANPLSFNVTL
LDWINVQDRPNDVESVVRKCFDSINRLDPRVIQPFLAECRDTIAKLDNQNMKAIKGLEDR
LYALDQMIASCKKLVNEQKELAQGFLANQKRAENLKDTSVLPDLCLSHANQLMIMLTNHR
KLLDIKQKCTTAKQELANNLQVRLKWCCYVMLHADQDGEKLQALLRLLTELMERVRVVDA
LSTVPQMYCLAVVEVVRRKLFIGHYREWACALVKDGKHLYETEKYKRETFGKLFRKCFLR
NRLFRGLDSWPPTSFCTRKPRKFDFELPDISLGDLQYLKTCCPTEVQPFLRVPTLCDFEP
LHLHVEMLQQLVLASQAASVDEMSQTITDLLSEQRGSCSQSAQRSTAAVTPQSDSTPGTS
SPKTPSSLSLPGPPCQPLPGPTALEDLSPDSIDAQTFDFETIGHPNMDPVLQQAGSLDLD
SLAESPESDFLSAVNEFVIENSPTPISDPTSPEMMVESLYSSVINAIDSKRMHDTTTLER
ENSKLATLNLSIEKYRSAAEESQANLRSVKDDLYRFRGLVLKEQRDFGFALKTMTIEVRN
MVDTIRKREEEELREQHQAELLSVQQDHEKQLQTLTEENRVNRNIVKDVQRAMLELEGLL
ERKEKELTQLEAERQCWTEAESGHTQSLSVLEQKISDQAQDVLTVAASRDSLYSQLETLH
IEIERGQQKIRQELEGAEQVHLQELEERMRQQHQTQLDTLARENQEAMECLAMVNRVKLS
EVADRHAASLTERDGQLRDLESRATELADLRCKLEVELALKESEMEVVRLLYEEAKQGQQ
EANVRKATVEAETQSLNEQLVQVNGQLHAKNEEYEKGLAELRTLMLMEKDQCISELVGRH
EEERNQRRSELTALQQQAQDAGRSHAEQLQNLQLDLDLQTAALRNDKEVQQRSFEEQEQH
LRTVICDLQTENDLLTKRLEQDTQAAQERLEKEESLKAAVPDAFKDFEQQKEEMEKRLLD
KIRQLENELRERQSSEREAGLSKVQTEGRASEAGAPLSLDSALQERLQQETASLHTQLEL
LERRKDEEMQNLKTSLIAEQQTNFNTVLMREKLKKEQIISELTEELRKVTQQQEKDKGLI
EMLSEDRAIVMQEKKQLEEDLNRLRSTALVSSAYYSPNPLALEPTGAGARLGSGACPGPG
TEVGAGACSSELFPDPDRLASVASTREDDRVDSAVEASMVTVHDNILMMSEEKQRILLLE
RTLHMKEEENKRLSQRLMSQSMSSVSSRHSEKIAIRDFQVGDLVLIILDERHDNYVLFTV
GPTLYFLHSESLTALDLKPDPMFTSASGASRRPWVLGKVMEKEYCQAKKAQNRFKVPLGT
KFYRVKAVPWNKKV
NT seq
4905 nt
NT seq
+upstream
nt +downstream
nt
atgaagttgtatgtgttccaggtcaacaatggaagcactctggcatttgacacagagctc
gctgtccaaactgtgttggacctcaaacatgccatccaggtcaaatacaagattgcaacc
cagcatcaagttctggttgtcaatggaggggagtgtatggttgcagagaggagagtctgc
agctacagtgccggcactgacaccaaccccatattcctgttcaacaaagagatgattttg
tgtgaccgggctccgacgatccctaaaaccaccttctctattgagaatgagatggagctc
aaggtggaggagtcactaatgatgccagcagtctttcacaccgttgcctcacgaacacaa
cttgctgtggaaatgtttgaagtcgccaagaaactttgctctttctgcgaacgcctggtt
catgatgaacacctccaacaccaaggttgggctgctatcatggcaaacctggatgactgc
accctgtcttatcagaagctactgtggaaatttgacacggcgtacattaattatcaacaa
gaatttgaggatatcaaattgaaactgacaaaactggggacagcagtttcagtcatggcc
aatatccccctgctggagtgtctgacccgccacagctacaaagaatgcatagagaagtcc
tgctctactccaaacaaggactctgacgagaccgaggaggagaagtccactgactcggtg
ctctgcccctcccccaccaagctacctgcatcgttctctgctccgggggcgggggactcg
ccagacaccgccgaagcccaggaaagcagtgagatgacggacagtagtgggctgagggca
gccctgcaagaggcagactctccagagagggccaaccccctgtccttcaacgtcacattg
ctggactggataaatgttcaagaccggcccaatgacgtggaatcagtcgtgaggaaatgc
tttgactccatcaataggctcgacccacgggtcattcaaccattcttagcggaatgtcga
gacacgattgccaaactggataatcagaacatgaaagccatcaaaggacttgaggacagg
ttatacgctctagaccaaatgatagcgagctgtaaaaagttggtcaatgaacagaaggaa
cttgctcagggctttctggccaatcagaagcgtgctgagaacctgaaggatacgtccgtg
ctgcctgacctgtgtctcagtcacgccaatcagctgatgatcatgctgaccaaccacagg
aagcttctggacatcaaacagaagtgcaccactgccaaacaggagctggcgaacaaccta
caagttcgtctcaaatggtgctgctacgtgatgctgcacgcggaccaggatggggagaag
ctgcaggccctgctgaggctgttgaccgagctgatggagagagtccgggtggtggacgcc
ctcagcaccgtgcctcagatgtactgcctggccgtggtggaggtggttcgcaggaagctc
ttcatcggccactacagagagtgggcctgtgctctcgtgaaggatggaaagcatctgtat
gagaccgagaagtataaaagggaaacgtttggcaagttgtttaggaaatgttttctccga
aatcggttgtttagaggacttgactcgtggccccccacttcattttgcacaagaaagccc
agaaagtttgactttgagcttcccgatatttcccttggtgacctgcagtacttaaagacc
tgttgtcctacagaggtgcagcctttcctcagggttccaacactgtgtgattttgagcct
ttgcatctgcatgtggagatgcttcaacagttggtccttgcttctcaagctgcaagtgtg
gatgagatgtctcaaactatcaccgatttactcagcgaacaaagggggtcgtgcagccag
agtgctcagagatccacggcagcggtgaccccacagtccgacagcaccccagggacttcc
tcccccaagaccccctcctctctcagtctcccggggcccccctgccagcccctccctggc
cccaccgccctggaggacctgtccccggacagcatcgatgcccaaacctttgacttcgag
acaattggccaccccaacatggaccccgtcctgcagcaggccggctccctggacctggac
tccctggctgagagccccgagtcagacttcttgtcggcggtcaacgagtttgtgatcgaa
aactcgcccacccccatcagcgaccccaccagcccagagatgatggtggagtcgctgtac
tcgtcggtcatcaacgccattgacagcaagcgcatgcatgacaccaccacattagagagg
gaaaactccaagttggctacgctgaatctgagcatcgagaagtaccgctctgctgccgag
gagtcccaggccaacttgcggagcgtcaaggatgacctgtaccgcttcagaggcctggtg
ctgaaggagcagcgagactttggcttcgccctgaagaccatgaccattgaggtgcgcaac
atggtggacaccatccgtaagagggaggaggaggagctgagggagcagcaccaggccgag
ctcctctctgtgcagcaggaccacgagaagcaacttcagaccctgacggaggagaaccgg
gtcaaccggaacatcgtgaaagacgtgcagcgggccatgctggagctggaggggttgctg
gagcgcaaggagaaggagctgacccagctcgaggctgagaggcagtgctggaccgaggcg
gagagcggacacactcagagcctcagtgtcctggagcagaaaatcagcgatcaggcccaa
gatgtgctgactgtggctgcctccagagactccctgtacagccagttggagacactccac
attgagatcgagcgcggccagcagaagatccgccaggagctggagggggcagagcaggtc
cacctgcaggaactggaggagaggatgaggcagcagcaccagacccagctagacaccctg
gcccgggagaaccaggaggccatggagtgcctggcaatggtgaacagggtcaagctgagt
gaggtcgcagaccgccacgccgcctctctgacagagagggacggccagctgagggacctg
gagtcccgggcaactgagctggctgacctacgctgcaagctggaggtggagctggccctg
aaggagtcagagatggaggttgtgaggcttctctacgaggaggccaagcaggggcagcag
gaagccaacgtgaggaaggctactgtagaggcagagacccagtccctcaacgaacagcta
gttcaggtcaacgggcagctgcatgctaagaacgaagagtacgagaagggcctggccgag
ctccggacgctgatgctcatggagaaagaccagtgcatctcggagctggtgggcaggcac
gaggaagagaggaaccagcgccgcagcgagctgaccgccttgcagcagcaggcccaggac
gcaggaaggagccacgcagaacagctgcagaacctccaactagacctcgacctgcagacg
gcagcactgcgcaacgataaggaagtgcagcagaggagttttgaggagcaggagcaacac
ttgaggactgttatctgcgatttgcagacagaaaatgatctgctcaccaaaagattagag
caggacacccaagcagcccaggaacgtttggagaaagaggagtccttgaaggctgcagta
ccagatgccttcaaagactttgagcaacaaaaggaggagatggagaaaagacttctagac
aaaattagacaacttgaaaatgagcttcgggaaagacaatcctcagaaagagaggcgggg
ttgtcaaaggtgcagacagagggtcgggcatccgaagcaggagctcctctctccctggac
tctgccttgcaggagcgtctgcagcaggagacggcctccctgcacacccagctggagctc
ctggagaggaggaaggacgaggagatgcagaacctcaagacctccctcattgcagaacaa
cagactaacttcaacactgttctgatgagagagaagctgaaaaaggaacagatcatcagt
gagctcacagaggagctgcggaaggttacccagcagcaggagaaggacaaaggtctgata
gagatgctgtctgaggaccgtgccatcgtcatgcaggagaagaagcagttggaggaggat
ctgaaccggctgcgcagcacagccctggtgtcctctgcctactacagccctaacccctta
gctctagagcccactggagccggggctagacttggatctggagcttgtcctggacctggg
actgaggttggggctggagcctgctcctctgagctcttccctgacccagacagactggcc
tctgtggcttccaccagagaggacgacagagtggactcggctgtggaggccagcatggtg
actgtgcacgataacatcctgatgatgtcggaggagaaacagcggatactgttacttgag
aggactttacacatgaaggaagaagaaaacaagcgcctcagtcaaagactgatgtctcaa
agcatgtcctcggtgtcgtcacggcattctgagaaaattgccatccgagatttccaggtt
ggtgacttggttctgatcatcctcgatgaaaggcatgacaactatgtgctattcaccgtg
ggtcccaccctgtacttcctccactctgagtccctcacggccctggacctcaaaccagat
cctatgtttacttcagcatcaggagcctcaagacggccgtgggttctcggaaaagttatg
gagaaagaatattgccaggcgaaaaaggctcaaaaccggttcaaagttcctttgggcacc
aagttctacagggtgaaagctgttccgtggaacaagaaagtatag
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