KEGG   Oncorhynchus tshawytscha (Chinook salmon): 112226858
Entry
112226858         CDS       T05605                                 
Name
(RefSeq) vacuolar protein sorting-associated protein 4B isoform X1
  KO
K12196  vacuolar protein-sorting-associated protein 4
Organism
otw  Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03250  Viral life cycle - HIV-1
otw04144  Endocytosis
otw04217  Necroptosis
Brite
KEGG Orthology (KO) [BR:otw00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    112226858
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    112226858
  09143 Cell growth and death
   04217 Necroptosis
    112226858
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:otw04131]
    112226858
   03400 DNA repair and recombination proteins [BR:otw03400]
    112226858
Membrane trafficking [BR:otw04131]
 Endosome - Lysosome transport
  Endosomal sorting complexes required for transport (ESCRT)
   ESCRT-III complex
    112226858
DNA repair and recombination proteins [BR:otw03400]
 Eukaryotic type
  Check point factors
   Other check point factors
    112226858
SSDB
Motif
Pfam: AAA MIT Vps4_C AAA_lid_3 AAA_16 TIP49 AAA_5 AAA_14 AAA_22 RuvB_N IstB_IS21 AAA_25 AAA_18 AAA_2 DUF815 AAA_17 AAA_33 AAA_24 nSTAND3 RNA_helicase PhoH Mg_chelatase AAA_7 AAA_28 Parvo_NS1 AAA_30 Sigma54_activat NACHT DUF5906 bpMoxR ResIII
Other DBs
NCBI-GeneID: 112226858
NCBI-ProteinID: XP_024247246
LinkDB
Position
LG28:18900297..18912851
AA seq 508 aa
MEPTNIQKAIAVAQKASQEDQAGNYTEAIKSYQHTVKYFLHIVKREPQGKEGNQKIREKC
KLYLDRVEELQEYIENKEKAIDLASKAAQEDKAQNYDEALRLYQQAVQYFLHVVKYESQG
DKAKQSIRAKCAEYLDRAEKLKEYLKKKEKAPPAKPVKESQADDKGNESDEGDNPEKKKF
QNQLSGAIVMEKPNIKWNDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPP
GTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFTLAREHKPSIIFIDEI
DSLCGSRSENESEAARRIKTEFLVQMQGVGNDNDGVLVLGATNIPWTLDSAIRRRFEKRI
YIPLPEEHARTFMFKLHLGATPTSLNDSDFVTLGKKTDGYSGADVSVIVRDALMQPVRKV
QSATHFKRVRGPSRDNPDIVVDDLLTPCSPGDPNGIEMTWMEVPGEKLCEPVVCMSDMLR
SLTSTKPTVNDQDLDKLRKFTEDFGQEG
NT seq 1527 nt   +upstreamnt  +downstreamnt
atggagccaacaaatatacagaaagctatagctgtagcacagaaagcctcccaggaggac
caggctgggaactacacagaagctatcaaatcttaccaacacactgtcaagtacttcctg
cacattgtaaaacgtgaaccacagggtaaagagggcaaccagaagatcagggaaaagtgt
aaattgtacctggacagagtggaagaactacaggagtatatcgaaaataaagagaaagcc
atagatctggccagcaaggcggcccaggaggataaagctcagaattacgacgaggccctg
cgtttataccaacaagctgttcagtacttcttacacgtagtgaaatatgaatcccagggc
gataaagccaaacagagcatcagggccaagtgtgccgagtacctggacagagcagagaag
ctcaaagaatacctaaagaagaaagagaaggctccacctgccaagcctgtgaaggagtcc
caagccgatgacaaagggaatgagagcgatgaaggagacaacccagaaaaaaagaagttt
cagaaccaactttcaggggctatcgttatggaaaagccaaacatcaagtggaatgatgtt
gccggattagagggagccaaagaggccctgaaggaagctgttattttgccaatcaaattc
ccacatcttttcacaggcaaaagaacgccgtggagggggatcctactcttcggtcctcct
ggaacaggaaagtcctacctggctaaagctgtggccacagaggccaacaactccaccttc
ttttccatctcctcatctgacctggtatccaagtggttgggagagagtgaaaagttggta
aagaacttgttcacccttgcacgggagcacaagccctccatcatcttcatagatgagata
gactcgctgtgcggctccaggagtgagaatgagagtgaggcagctcgccgcatcaagaca
gagttcctggttcagatgcagggggttgggaatgacaacgatggtgtactggtgctcggg
gccaccaacatcccttggacgttggattctgctatcagaagacggtttgagaagaggatc
tacatccccctgcccgaggaacacgcccgcaccttcatgttcaagctccacctgggcgcc
acacccaccagcctcaacgactctgactttgtcaccctgggaaagaagacagacgggtac
tcaggggctgacgtcagcgtcatcgtcagagacgcgcttatgcaaccagtcagaaaagtt
cagtcagccactcacttcaagcgggtacgagggccatcgagagacaaccccgacatcgtg
gtagatgaccttttgaccccatgctctccaggagacccgaatggcattgagatgacatgg
atggaagtccctggggaaaagctatgtgagccagttgtttgtatgtctgatatgctaaga
tccctgaccagcacaaagccaacagtcaatgatcaggatttggacaaactgagaaaattc
acagaggactttggacaggagggctaa

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