Oncorhynchus tshawytscha (Chinook salmon): 112226954
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Entry
112226954 CDS
T05605
Name
(RefSeq) E3 ubiquitin-protein ligase COP1 isoform X1
KO
K10143
E3 ubiquitin-protein ligase RFWD2 [EC:
2.3.2.27
]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04115
p53 signaling pathway
otw04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
112226954
09140 Cellular Processes
09143 Cell growth and death
04115 p53 signaling pathway
112226954
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
otw04121
]
112226954
Enzymes [BR:
otw01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
112226954
Ubiquitin system [BR:
otw04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
112226954
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
112226954
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_TEP1_2nd
WD40_WDHD1_1st
Beta-prop_EML_2
WDR55
Beta-prop_EIPR1
Beta-prop_RIG_2nd
zf-C3HC4_2
EIF3I
Beta-prop_TEP1_C
Beta-prop_WDR19_1st
zf-C3HC4
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
zf-RING_2
Beta-prop_EML
zf-RING_UBOX
Beta-prop_DCAF4
zf-C3HC4_3
Beta-prop_WDR90_POC16_2nd
zf-RING_5
zf-C3HC4_4
RING_XB3-XBAT31
WD40_RFWD3
Beta-prop_WDR35_TULP_N
WD40_like
Beta-prop_Vps41
Beta-prop_IFT140_1st
Beta-prop_DCAF12
Beta-prop_IFT122_1st
Beta-prop_NUP159_NUP214
zf-RING_10
WDR90_beta-prop_4th
UvrD-helicase
zf-rbx1
zf_C2H2_10
Sina_RING
Motif
Other DBs
NCBI-GeneID:
112226954
NCBI-ProteinID:
XP_024247417
UniProt:
A0A8C8CAB5
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All DBs
Position
LG28:complement(23809982..23819986)
Genome browser
AA seq
712 aa
AA seq
DB search
MASNRQQQTGGGTGPGTSSSSTGGTTNANGATSVGGNVSTNVNNSSNVVPSRTLATTGDG
LLVPAAAVQSPISLATLSRPSSSSSGTSRKRPLHQAPLYNGLLNSYEDKSNDFVCPICFE
MIEEAHMTKCGHSFCYKCIRQSLEDSNRCPKCNYIIDNVDQLYPNFLVNELILKQKQRSD
EKRLKMDHPNGSRWQVFQDVLGTDQENLDLANVNLMLELLVQKKKQLEAESQAAQRQILM
EFLKEARRNKREQLEQLQKELNFLEEDIKRVEEMSGLYSPMSDMDRNLDSTVPNFEAPSP
APSSLMDSTEYPSQPPGFGGTSQGKRQTWYNSTLASRRKRLTAHFEDLEQCYFSNRMTRL
TDDSRNLNQLDDFMECLSKFTRYNSVRPLATLSYASDLYNGSSIVSSIEFDRDCDYFAIA
GVTKKIKVFEYGTVIQDAVDIHYPVNEMTCNSKISCISWSSYHKNLLASSDYEGTVILWD
GFTGQRSKVYQEHEKRCWSVDFNLMDPKLLASGSDDAKVKLWSTNLDNSVASIEAKANVC
CVKFSPTSRYHLAFGCADHCVHYYDLRNTKQPIMVFKGHRKAVSYAKFVNGEEIVSASTD
SQLKLWNVNKPHCLRSFKGHINEKNFVGLASNGDYVACGSENNSLYLYYKGLSKTLLTFK
FDTVKSVLDKDKKEDDTNEFVSAVCWRAMPDGESNVLIAANSQGTIKVLELV
NT seq
2139 nt
NT seq
+upstream
nt +downstream
nt
atggcaagcaaccgtcaacagcaaactggcggtggaacggggcctgggacaagtagcagc
agtaccggtggcactaccaatgctaacggtgctaccagcgtaggcggtaacgtcagtacg
aatgtgaacaattcttcaaatgttgtgccctcacggactctggctacaactggcgatggg
ttgctcgtacctgcagcggctgtccagtctccaataagcttagccacacttagcagaccc
agttcatcctcttctggcaccagcagaaaacgtcctctccaccaagcacctctctacaat
ggtctcttgaattcctacgaagataaaagcaacgattttgtgtgcccgatctgttttgaa
atgattgaggaggcacacatgacaaaatgtggacacagtttctgctacaagtgcattcgc
cagagtttggaggacagcaataggtgcccaaaatgtaactacatcattgacaacgtggat
cagctctatccaaactttcttgtcaatgaacttattctcaaacaaaaacagagatcagat
gaaaaacggctgaagatggaccatcctaatgggtcaagatggcaagtgtttcaagacgtc
ctgggcacagaccaagagaacctagatcttgctaatgtcaacttgatgctggaactcctt
gtacagaaaaagaaacagctggaagcggaatcacaagctgctcaacgtcagatcttaatg
gaattcctcaaagaagcaagaagaaataaaagagagcaactggagcagttgcagaaggag
ctaaactttttggaggaggatatcaagcgtgttgaggaaatgagtggactgtactcacca
atgagtgacatggatcgtaacttggacagcactgtgcccaatttcgaggctccctcacct
gcacctagtagtcttatggattcgacagagtatccgagtcaaccaccaggttttggtgga
acttcccagggtaagaggcaaacgtggtacaacagtactctggcttcacgtagaaagagg
ctcacagcgcactttgaagatctggagcaatgctacttctctaaccggatgacccgatta
acagatgacagcaggaacctaaatcaactggatgatttcatggagtgtctctcaaagttc
acacggtacaactctgtgcggccgttggcgaccctgtcttatgctagtgatctctacaac
ggctccagtattgtctctagcattgaatttgatcgtgactgtgattactttgccattgct
ggcgtcaccaagaaaatcaaggtgtttgagtatggaacagtgatccaggatgctgtggac
attcattaccctgtcaatgaaatgacatgcaactccaaaatcagctgtatcagctggagc
agctaccacaagaatctgttggctagcagcgactacgagggaacagtcatcctgtgggat
ggtttcactggccaaaggtcaaaggtctatcaggagcatgagaaaagatgttggagtgtc
gatttcaacctcatggatcccaagcttctagcctctggttctgatgatgcgaaagtgaag
ttatggtctaccaaccttgacaattcagtcgccagcatcgaggccaaagcaaatgtgtgc
tgtgtaaagttcagtccgacatcgaggtatcaccttgcttttggatgtgcggaccactgt
gtccactactacgacctccgcaacactaaacagcccatcatggtgttcaaaggccacagg
aaagctgtgtcctatgctaagtttgtcaacggagaggaaattgtatctgcctcaacagac
agccagctaaagctgtggaatgtaaacaagccccactgcttgcgctcattcaagggccac
atcaatgagaagaactttgttggccttgcctccaatggggactatgttgcgtgtggaagt
gagaacaactcactttatctctactacaaggggctgtccaagacactgctgacgttcaag
tttgacactgtgaagagtgtgttggataaagacaagaaggaggatgacaccaacgagttt
gtcagcgccgtatgctggagagctatgcctgacggggagtccaatgtgctgattgctgca
aacagtcaaggaacaatcaaggtacttgagcttgtttaa
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