Oncorhynchus tshawytscha (Chinook salmon): 112227000
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Entry
112227000 CDS
T05605
Name
(RefSeq) integrin beta-1
KO
K05719
integrin beta 1
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03271
Virion - Rotavirus
otw04145
Phagosome
otw04510
Focal adhesion
otw04512
ECM-receptor interaction
otw04514
Cell adhesion molecule (CAM) interaction
otw04517
IgSF CAM signaling
otw04518
Integrin signaling
otw04530
Tight junction
otw04810
Regulation of actin cytoskeleton
otw04820
Cytoskeleton in muscle cells
otw05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03271 Virion - Rotavirus
112227000
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
112227000
04514 Cell adhesion molecule (CAM) interaction
112227000
04517 IgSF CAM signaling
112227000
04518 Integrin signaling
112227000
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
112227000
09144 Cellular community - eukaryotes
04510 Focal adhesion
112227000
04530 Tight junction
112227000
09142 Cell motility
04820 Cytoskeleton in muscle cells
112227000
04810 Regulation of actin cytoskeleton
112227000
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
112227000
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112227000
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
otw04147
]
112227000
04515 Cell adhesion molecules [BR:
otw04515
]
112227000
04090 CD molecules [BR:
otw04090
]
112227000
Membrane trafficking [BR:
otw04131
]
Endocytosis
Phagocytosis
Integrins (complement receptors)
112227000
Exosome [BR:
otw04147
]
Exosomal proteins
Proteins found in most exosomes
112227000
Cell adhesion molecules [BR:
otw04515
]
Integrins
Integrin beta subunits
112227000
CD molecules [BR:
otw04090
]
Proteins
112227000
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Integrin_beta
Integrin_B_tail
Integrin_b_cyt
EGF_integrin
I-EGF_1
EGF_2
EGF_Teneurin
vWA_SIBA-E
Motif
Other DBs
NCBI-GeneID:
112227000
NCBI-ProteinID:
XP_024247534
LinkDB
All DBs
Position
LG28:26726359..26761977
Genome browser
AA seq
802 aa
AA seq
DB search
MDLRLLSIATLLGILCFCSAQQEGSDCIKANAQSCGECIQVAEKCGWCTDTDFLKQGESK
SARCDELQSLITKGCTKAKIENPRGSTSINKNKAVTNRKKDMVEKLKADQITQIQPQKLT
LNLRSGEAQTFKLKFKRAEDYPIDLYYLMDLSFSMKDDLENVKNLGTDLMREMKEVTSDF
KIGFGSFVEKTVMPYISTTPARLLNPCTSTNNDTCTSPFSYKNVLKLTENGEEFNSLVSK
QQISGNLDSPEGGFDAIMQVAVCGDAIGWRNVTRLLVFSTDAGFHFAGDGKLGGIVLPND
GKCHLENNMYTMSHYYDYPSIAHLVQKLSDNNIQTIFAVTEEFQPVYKELKNLIPKSAVG
TLSSNSSNVIKLIIDSYNSLSSEVILENGKLPEGVSITYKSICKNGWVGTGENGRKCSNI
SIGDEVSFEIAIKSEKCPPQGKSETITIKPLGFTENVEIVLNFICECECSKDGKPLSEMC
HNGNGTFECGACRCNEGRIGRLCECSTDEVRTDDLDANCRKDNGTGICSNNGDCVCGTCE
CKKRENPEERYSGKFCECDNFNCDRSSNKLCGGHGRCECRVCICDANYTGSACDCSLDTS
TCLAANKQICNGRGTCECGVCKCTNPKFQGPTCEICPTCPGVCAEHKDCVQCRAFDTGEK
KDTCERDCSYFNLIRVKDRDKLPQPADQSYPLSHCKERDANDCWFYYTYAVRNHTEREVY
VVDTLECPAGPDIIPIVAGVVAGIVLIGLALLLIWKLLMIIHDRREFAKFEKEKMNAKWD
TGVNPIYKSAVTTVFNPKYEGK
NT seq
2409 nt
NT seq
+upstream
nt +downstream
nt
atggatctgaggctactttcaatagcaacattattaggaatcttatgtttctgcagtgca
cagcaagagggcagtgattgcatcaaggccaatgcacaatcatgtggggaatgcatccaa
gtggcagagaaatgtggatggtgtacagacactgacttcctgaagcagggagagtctaag
tcagcacgctgtgatgagctacagtccctgatcacgaagggctgcactaaggccaagatt
gagaacccccggggcagcacctccatcaacaagaacaaggctgtcaccaaccgcaagaag
gacatggtagagaagctgaaggctgaccagatcactcagatccagcctcagaaactcacc
ctcaacctccgatccggtgaggcccagacctttaagttgaagttcaagagggcagaggac
tacccaatcgacctctactacttgatggatctctccttctccatgaaagacgatttggag
aatgtcaagaatctggggactgacctgatgcgtgagatgaaggaggtcacctcagacttc
aagatcggtttcggctcctttgtggagaagacggtgatgccatacatcagcactacccca
gccagactgctgaacccctgcaccagcaccaacaacgacacctgcaccagccccttcagc
tataagaacgtgctgaagctgactgagaacggggaggagttcaacagcctggtcagtaag
cagcagatctctggaaacctggactcccctgagggaggattcgatgccatcatgcaggtg
gccgtctgtggggatgccattggctggaggaacgtcacacgtctgctggtgttctccact
gatgctggcttccactttgctggagacggcaagctgggcggcatcgttctgcccaacgat
gggaagtgtcatctggagaacaacatgtacaccatgagccattactacgactatccctcc
attgcccatttggtccagaaactgagcgacaacaacattcagaccatttttgctgttact
gaggaattccagcctgtttacaaggaactgaagaacctcatccccaagtcagcagtagga
actctgtcctccaactccagcaacgtcatcaagctcattatcgattcttacaactctctg
tcatctgaagtcattctggaaaacggcaagctgcctgaaggtgtatccataacatacaag
tccatctgcaagaacggttgggttggaacaggagagaatggaagaaaatgctcgaacatc
tccattggcgatgaggtgtcctttgagattgccatcaagtccgagaagtgtccgcctcaa
ggcaagtccgagaccattacaatcaagcccctgggttttactgagaatgtggagatcgtc
ctcaacttcatctgcgaatgtgaatgttccaaagatggaaaacctctcagcgagatgtgc
cacaatggcaacgggacctttgagtgtggagcctgcaggtgcaacgagggccgtattggc
agactgtgtgagtgcagtacagacgaggtgaggacggacgacctggacgctaactgtcgg
aaggacaacggtacaggcatctgcagcaacaacggagactgtgtgtgtggaacctgtgag
tgtaaaaagagagagaacccagaagaacgttacagtgggaagttctgcgagtgtgacaac
ttcaactgtgaccgctccagcaacaaactctgtggaggacatggacgttgtgagtgcagg
gtgtgtatctgtgatgccaactacacgggcagcgcctgcgactgttccctggacacctcc
acctgcctagcagccaacaagcagatatgtaatggccggggcacctgcgagtgtggcgtc
tgcaaatgcaccaaccccaagttccagggtcccacctgtgagatctgccccacctgcccc
ggagtctgcgctgagcacaaggactgtgttcagtgccgggcctttgacacaggagagaag
aaggacacgtgtgagagggactgcagctacttcaacctgatcagagtgaaggaccgggac
aagctgccccagccagccgaccagtcctaccccctatcccactgtaaggagagggatgcc
aacgactgctggttctactacacctacgccgtcaggaaccacacagagagggaggtctat
gtggtcgacactctggagtgcccagcgggtcctgatattatccccatcgtggctggcgtg
gtggcgggcattgtgctgatcggcctggccctccttctcatatggaagctgctcatgatc
atccacgaccgcagggaatttgccaagttcgagaaggagaaaatgaatgcgaagtgggac
acgggagtgaatcccatctacaagagtgccgtaacaactgttttcaatccaaaatacgag
ggcaaatga
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integrated database retrieval system
