Oncorhynchus tshawytscha (Chinook salmon): 112227005
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Entry
112227005 CDS
T05605
Name
(RefSeq) GRB10-interacting GYF protein 2 isoform X6
KO
K18730
PERQ amino acid-rich with GYF domain-containing protein
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
otw03019
]
112227005
Messenger RNA biogenesis [BR:
otw03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
112227005
Surveillance factors
Other surveillance factors
112227005
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GYF
GYF_2
TRI4_N
Motif
Other DBs
NCBI-GeneID:
112227005
NCBI-ProteinID:
XP_024247542
LinkDB
All DBs
Position
LG28:27774673..27801921
Genome browser
AA seq
1400 aa
AA seq
DB search
MYCHVTHSQPSCGNGERATHNSNTNKPCAVSKSREVLGRMAETQTLNFGPEWLRALSGGG
HGGGSSSSVATSPPLSPAMPKYKLADYRYGREEMLALYVKDREIPVDLHDKDFLPILQEE
PLPPLALVAFTEEEQRNFSMSVNSAAVLRLMGRGGGPVGPGAPRGRSTSRGRGRGRGDGG
FYQRSFDDVEGGFGRGGREMHRSQSWEESHAESIFSPSRGDRRFEKPGRKEPEVAPTHFL
MNHIRANYEEVGTSVGGLPVRKHDFTRSESENWRTSRDEVNGEDGEEGGWRLAGALACAL
RWDSDRWCPPSPDGPRSAGWREAHPGEQPRQRRLPFDAREDERGYRHPPSASGSLEEDGG
GSLPEWCLEDAEEETGTFDSSGAFLSLKVRKAPKEPILEEAELDFRPLEECDEGLEEDGH
PRETKDTDGEARREPIRKQDVGRAIEVPPAPSPPEPLPPSQPDRVEDPEGPLEKPLERPP
APEHRPEANKVPLHTPMSNTMLDSLSIPHTAAHTLTVSAPSSTIQMQQKPLEVPVAMPAP
LPFSASVRPQSTSIMAPNNMATSTGLMAPIGRPTAMPPHHTMDEDEGLKHFEQEAEKMVA
YLQDGDDRLAAKSSATKPAGLPLTHEAALKWFYKDPQGEIQGPFSNPEMTEWFQAGYFTM
TLLVKRGCDEVFQPLGEIIKMWGRVPFAPGPAPPPLLGDAGDQERLKRQQELTALNLYQL
QQLQYQYLLRQQYAQALAQQKAQALSSAPHQQQQQQQQQINLLLQQYQALKMRSSENTTS
ESLLPPVTRSMSVPESQGSVWEMQNTSQASCTSNIQQPTPSAWEGSSVWDLPIDSMAQAP
TIEQMQNLEKNKAAKLELERGEAELSAKREEEEHKRQEEEQLARQKQEEALKRQRKQQQE
EAQRQQKEEEEERHAQEEALRRLEERRREEEEERKQREEFLRKQEEERRKQEELEALRRH
EEEKRQEEEEAAAAVALVRQQQEEAKRREQEAARQQELARQRQQQQEALRRLQQQQQLAQ
MKLPSSSKWGQQSAVTAAAISQSQNALSLAEIQKVEEERERQAREEQRRQQAEHLKLLQQ
QALQEARNPQAKLSGWGSVAKQPATTKSLLEIQREEAQQVKQRKEQGAGGQQPSHPTVTQ
QNRAQNRATTALSPSVWGSVATSGGAPNWGGDSSIWGDSTNSNMGFWEEEVAQAPPPARK
PNAQKNNKGNANLSSRANKKVEEEEKLLKLFQGVNKRQQDGFMQWCEKTLHTLNTANNLD
VPTFASFLKEVDSPYEVHDYVRAYLGDTSEAKEFAKQFLERRAKQNANQQKAPPAPQNQQ
PTLKQQQQDSMWGVSGTGSPSLYQSNHTSLQQQARFETVTSGKKKKKQKMVRADPSLLGF
SVNAASERLNMGEIETVEDF
NT seq
4203 nt
NT seq
+upstream
nt +downstream
nt
atgtattgtcatgtgacccattctcagccatcttgtggaaacggagagagagccacacac
aactcgaatacaaataaaccctgtgctgtcagtaaaagcagagaagttctaggaagaatg
gcagaaactcagacactcaacttcggaccagaatggctccgggccctgtctggaggtggc
catgggggtggtagcagcagtagcgttgccacctcaccacctctctcacctgcaatgcca
aagtataaacttgcagactaccgctacgggagagaagaaatgctagcactttatgttaag
gatagggagatccctgtagacctgcacgataaggattttctgcccattttacaagaggag
cccctgccaccactggcacttgtagcatttacagaggaagagcagagaaatttttccatg
tctgtaaacagtgcagctgtgctcaggctgatggggagaggagggggtcctgttgggcca
ggggcgccgaggggtcgaagtacctcacggggtcgaggtcggggtagaggagacggaggg
ttttaccaaagaagttttgatgacgtggaaggaggctttggacgcgggggcagggagatg
caccgctcccagagctgggaggagagtcatgctgagtctattttctccccatctagggga
gaccgaaggtttgaaaagccaggtcgaaaagagccagaagttgctcctacccacttcctg
atgaatcatatccgtgctaactacgaggaggttgggaccagtgtggggggcctgccagtg
aggaagcatgacttcacgcgttcggagagtgagaactggcgcacgtcccgggatgaagtg
aatggtgaggatggtgaagaggggggttggcgcctggctggcgccttggcatgtgccttg
cgatgggacagcgaccggtggtgccccccgagtccagacgggccgcggtcggcagggtgg
cgagaggcccacccaggggagcagccgcggcagcgcaggctccctttcgatgccagggag
gacgagcgcggctacaggcatcccccatcggccagcggcagcctggaggaggatggaggg
ggcagcctgccagagtggtgtctggaggacgctgaagaggagacgggcaccttcgactcc
tctggagccttcctttcgctcaaggttcgaaaagctcccaaggagcccatcctggaggag
gcagagctggacttcagacccctggaggaatgtgacgagggtctggaggaggacggacac
ccccgggagaccaaagacacagacggagaggccaggagagagcccatcagaaaacaagat
gtggggagagcgatagaggtgccccctgctccctctcctcctgagcccctgccccccagc
cagcccgacagagtagaggaccctgaggggccgttggagaagccacttgagcgaccccct
gccccggaacacaggccagaggccaacaaagtccccctgcacacccccatgtccaacaca
atgctggactccctctccatcccccacaccgctgcacacacactcacagtgtcggccccg
tcatccaccatccagatgcagcagaagcccctggaggttcccgtggccatgcccgccccg
ctgcccttcagtgctagcgtcaggccccagagcacgtctatcatggctcctaacaatatg
gccaccagcacgggcctcatggcgcccatcggaaggcccacggccatgccaccacaccac
actatggatgaagatgagggactgaagcactttgaacaggaagcagagaagatggtggcg
tatctacaggacggtgatgaccggctggctgccaagagctcagctaccaaaccagccggc
ctgccactcacacacgaggctgctctgaagtggttttataaagacccccagggagagata
cagggtccgttcagtaacccggagatgacagagtggttccaggcgggctatttcaccatg
accctgctggtgaagagaggctgtgacgaggtcttccagcccctgggtgagatcatcaag
atgtggggcagggtgcccttcgcccccggcccagcaccgccacccctactgggtgatgcc
ggggaccaggagcgtctgaagcggcagcaggagctgacggccctcaacttgtaccagctg
cagcagctgcagtaccagtaccttttgaggcagcagtacgcccaagccctggcccagcag
aaagcccaggccctcagctcagcaccacaccagcagcagcagcaacagcagcagcagatc
aacctgctcctccagcaataccaagccctcaagatgagatcatcagaaaacacaacatct
gagtctctcttacctcctgtgactcggtccatgtccgtaccagaatcccagggttctgtg
tgggaaatgcagaacacctctcaggcctcctgcacatcaaacatccagcaacccacaccc
agtgcgtgggagggcagcagtgtgtgggatctgcccatagactccatggcccaggccccc
accatagaacagatgcaaaacctggagaagaataaggctgccaagctggagctggagcgg
ggtgaggcagagctgagtgccaagagggaggaggaggaacacaaacgccaggaggaggag
cagctagcacgtcagaaacaggaggaggcattgaagaggcagcggaagcagcagcaggag
gaggcacagcgccaacagaaagaggaggaagaggaacggcatgcgcaggaggaggccctc
cgcagactggaggagaggaggagggaggaggaagaggagaggaagcaaagggaagagttc
ctccgcaaacaggaggaggagcgccgaaagcaggaggagctggaggccctgaggaggcat
gaggaagagaagcggcaagaggaggaggaggcagcggctgcggtggctttggtacggcaa
cagcaggaggaggcgaaaaggagggagcaggaggcggcgaggcagcaggagctagccaga
cagaggcagcagcagcaggaggcgctccgccgactacagcagcaacagcagctagcccag
atgaagctgccgtcttcctctaagtggggccagcagtcagcagtcacggcagcagccatc
tctcagtcccagaacgcgctgtcgctcgctgagatccagaaagtggaagaggagagagaa
cgacaggcacgagaggagcagcggcgccagcaggcggagcacctgaagctcctgcagcag
caggccctgcaggaggcccggaatccccaggccaagctctctggctggggaagtgtggcc
aagcagccggccacgacgaagtccctgctggagatccagagagaggaggcccagcaggtg
aagcagaggaaggagcagggggctgggggccagcagcccagtcaccccacagtcacccag
cagaaccgtgcccagaacagagctaccaccgctctgagcccctcagtgtggggctcggtg
gccaccagcggtggggctcctaactggggcggtgacagcagcatctggggcgacagcacc
aactccaacatgggcttctgggaggaggaggtggcccaggccccaccccccgccaggaag
cccaacgctcagaagaacaacaagggcaacgccaacctcagcagtcgggccaataagaag
gtggaggaggaggagaagctgctgaagttgttccagggggttaataagagacagcaggat
ggcttcatgcagtggtgtgagaagaccctgcacaccctcaacactgccaacaacctggac
gtcccgacatttgcatccttcctgaaggaggtggacagtccgtacgaggtgcacgactac
gtgcgcgcctacctgggggacacgtccgaggccaaggagtttgccaaacagttcctggag
cgccgtgccaagcagaatgccaaccaacagaaagcgcccccggccccgcagaaccagcaa
ccaacactaaaacagcaacagcaggattcaatgtggggtgtaagcgggacaggctctcct
tctctgtaccagtcaaaccacaccagcctccagcagcaggcacgcttcgagaccgtcacc
tcagggaagaagaagaaaaagcaaaagatggtccgggcagaccccagcctgctaggtttt
tctgtgaacgcggcgtctgagaggttgaatatgggtgagatcgagacggtggaggacttt
tga
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