Oncorhynchus tshawytscha (Chinook salmon): 112227050
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Entry
112227050 CDS
T05605
Name
(RefSeq) polypyrimidine tract-binding protein 2 isoform X1
KO
K14948
polypyrimidine tract-binding protein 2
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
otw03041
]
112227050
Spliceosome [BR:
otw03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
112227050
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RRM_5
RRM_1
RRM_8
RRM_occluded
RRM_10
RRM_Nup35
Motif
Other DBs
NCBI-GeneID:
112227050
NCBI-ProteinID:
XP_024247612
LinkDB
All DBs
Position
LG28:29322246..29331505
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AA seq
547 aa
AA seq
DB search
MESIVSDVAVGMKRGSDDLSLYSTSPNSVTANGNDSSKKLRVEDRMESPPSRVLHIRKLP
SEVSETEVIALGLPFGKVTNILMLKGKNQAFLELGTEEAAVTMVNYYTAVMPQVRNVPVF
IQFSNHKELKTDSTLNQRAQAVLQAVSAVQDGGSPNSDNSTLDSVLAHAPSPVLRIIIDN
MFYPVTLDVLQQIFSKFGTVMKIITFTKNNQFQALLQFSEPVNAQQARLSLDGQNIYNSC
CTLRIDFSKLVNLNVKYNNDKSRDYTRPELPAGDGQPALDPAMAAAYNKDSSLLGTPSGM
GPHYSNGGGFQSSLSLSQGGGAINPMSAAAAAAAAAGRMVLSGNSGCSGVLLVSNLNEEM
VTPQSLFTLFGVYGDAQRVKILYNKKDSALIQMSDGNQAQLAMSHLNGQKMHGKIIRVTL
SKHQAVQLPREGLDDQGLTKDFTNSPLHRFKKPGSKNFQNIFPPSATLHLSNVPFGLDRE
DVTEEDLRLLFSNAGGIVKAFKFFQGHKMALLQMSTVEEAIQALMDLHNYDMGSNHHLKV
SFSKSTI
NT seq
1644 nt
NT seq
+upstream
nt +downstream
nt
atggaaagcattgtcagtgatgttgcagttggcatgaagagaggctcagatgatttgagt
ctctacagcaccagccctaactctgtgactgctaacggcaatgacagcagtaaaaaactg
agagtggaggacaggatggagagtcccccttcccgtgtgctccacatcaggaagttgccc
agcgaggtgtcagagacagaggtcatcgctctgggcctaccgttcggcaaggtcaccaac
atcctcatgctgaaaggaaaaaatcaggccttcctggagttgggtacggaggaggcggct
gttaccatggtgaactactacacggcggtgatgcctcaggtccgcaacgtccccgtgttc
atccagttctctaaccacaaggagctaaagacagacagcactctcaaccagcgtgcacag
gctgtcctccaggccgtgtcggcagtgcaggatggtggctctcccaactctgacaacagt
acactggacagtgttctagcccatgcccccagccctgtgctcaggataatcatcgacaac
atgttctacccagtcactctggacgttctacagcagatcttctccaagtttggaacagtc
atgaagatcatcacgttcaccaagaacaaccagttccaggccctgctccagttcagcgaa
ccagtcaacgcccagcaagccagactgtccctggatggccagaacatctacaattcctgc
tgcacgctgcggatcgacttctccaagctggtcaacctgaacgtcaagtacaacaatgac
aagagccgggactacacccggcccgagctccctgccggtgacggccagcctgcactagac
cctgccatggccgccgcctataataaggactcctccctgctcggtaccccctctggaatg
ggaccgcactactctaatggtggagggtttcagtcttctctctccctctcgcagggcgga
ggagccatcaatccaatgagtgctgcggcggcagcggcggcggctgcagggaggatggtg
ctctccggaaactctggctgcagcggcgtgctcctggtcagcaacctgaacgaggagatg
gttacgccccaaagtctgtttaccctcttcggggtgtatggtgatgctcagcgcgtgaag
atcctctacaataagaaggacagtgctcttatccagatgtcagacgggaaccaggcccag
ctcgcgatgagccacctgaatggccagaagatgcacgggaagatcatccgtgtgacgctt
tccaagcaccaggcagtgcagctgcccagggaagggctggatgaccagggcctaaccaag
gacttcaccaactcccccctgcaccggttcaagaagcccggctccaagaactttcagaac
atcttccctccttctgccacgctccacctctccaacgtccctttcggacttgacagggag
gatgtgacagaggaggatctgcgactgctgttctctaatgctgggggcattgtgaaggcc
ttcaagtttttccaaggccacaaaatggcgctactccagatgtccacggtggaggaggcc
atccaggccttaatggacctccacaactacgacatgggcagcaaccaccacctgaaggtc
tccttctccaagtcaaccatctag
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