Oncorhynchus tshawytscha (Chinook salmon): 112227065
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Entry
112227065 CDS
T05605
Name
(RefSeq) nucleoprotein TPR isoform X1
KO
K09291
nucleoprotein TPR
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
112227065
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
otw03019
]
112227065
Messenger RNA biogenesis [BR:
otw03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
112227065
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_MLP1_2
GAS
ERM_helical
Motif
Other DBs
NCBI-GeneID:
112227065
NCBI-ProteinID:
XP_024247647
UniProt:
A0A8C8G8X5
LinkDB
All DBs
Position
LG28:complement(29964194..29986079)
Genome browser
AA seq
2429 aa
AA seq
DB search
MAAVLLQVLERTELNKLPKAAQNKLEKFLTDQKNEIESLKTQHERFKADCEQQYFDVEKR
LAESQEQIVFHTRNYQTLSEENTKLIEELNNLKGVDVESSEEKESQQPSKAKYEIEAERR
ELARLLEKRTQDVENLTEDVKRLNDKLVETNTAKIDLQLKLDEIQSSEVSIQHREKRMEQ
EKELLQNQNTWLNSELKTKTEELLSVSREKGKEILELKCSFECKKDEVTRLQTQVTNLKK
SCENLQKRVEDLMTKLKEAKDHHSTMEEKYRNEQNAHIKLSNLYKGSASDAESKNEELNR
AVEELHKLVKEAGDARQNMEKKLADMEGSKSKQEAELKEKFKKMELENANLRASDKKRSM
PVLTEEELDSMCPTAAAVAKIVKPGMKFMELYNAFVDIQDQLLVEKQENRRVTRVLDEIV
QEVEEKAPILKRQREEYESMQRSMNSLCAKLEQARTEIHSLQKETDEAKKHCSNLEKDNQ
RSERELEDMSQQVRVLLVELEEARGNPVVREETMNLSSSSEIINPRQVSFRSVEELQRQN
QSMLARLRELGEKMEREQTEANSARVTQLEQQLEKVQKELEIIKEQRNQQKQLADSNGRQ
RDMYRILLSQSTGFNLPPQGPTQEAAPQMYTPSRPSFPPPTRSTPMRASATESSQATQAK
AALKQLNDSFTTYKNEKAVNDRMLNEQNEKLQEQLSAVRSQKAKLSTQLEFASKRYEMLQ
ENVNGYRREIAALHDKSQKMAATAQKHEQIIHTMTQDLRAANEKLALAEVRGENMKKERD
MLKSAESRLNQEKEAMMAEQRNQNLLLTNLKSIQLTMERTETETRQRLNSQIERLERELT
QFKKKLAEEVEQRHMLGRNQDAQLLEAKKQLEAQCALHQKTKELLKNAEQQANLLKQQLS
HAESQNQGSGLGQGQSLGQTNPRAPIRAPLRAPSQTQSQEAQAKLQSELEEVRGRLQQAE
KQISDLQERLQNASTNVEQYRTVVLSLEESLSKEKQARSPVETRLKEAQEFQRGLEKKLV
EAEKEKQELREEKRKAMDIVEKQVNELKRTMKNLQSELQEAEERKAAAITQEQKAMQDSL
QQGKLAAEAQNKYERELMLHAADVEALQAVKKQGLQGNQSRKQLEDKAKQTTTQLQEART
NWNQLEKKLKEDLSKQQKRADELQKQNGLLHQQMESLGAKMAATVQQQQQASRESSLNLS
FSEEGKSQEQILEILRFVRREKEIAETQFEVAEVETLRYKQQVEHQDRELKELQESLNAE
REKLQLTAKTMAQHDERMKRMENLNVLVETNKMLKEERERLEQELHQTQAKVRKLEADIT
PLQDSNSELSEKNGMLQAEKKLLEEDSKRWKARTQQLVSQQKDTDQEENKKLHSEREAHL
KRIQQLSEETGRLKAEVARTHASVITAQSQAQNLKENLGKVTTERDAKHLDIQEKCKTIT
QVKKIGRRYKTQYEELKVQHDKLVAEAAAKPAQEEVLQAVQQAQQQAQQASAQEIQSLKD
SLSQAETKVKDLEGQLKNVQETVNERNTEMGRLKQELTRLQEQSTQAQGTQGEVTRLKQE
LTRLQEQSAQGTQGEVTRLKQELQEKTAQEESLRQQMADKEEKTKKVFMGAKQKINQLNI
AKEHLTKEVEELKQQREEQEVRLSALKSQYEGRLHRQDREIRELRDHRDEQPQRDESQDQ
GKNKTQEQQQRAPDQRQINQRTSQAADRGSGSSGSSEQPPTANIKPTTVSGGAPSKPSPI
PGNKSTPRASIRPMVPITMPTPTATVMPHTQSESQEVLQSSESGTPVEHVSVFGSTSGSV
RSTSPSVQNITHSQFQPISSQATAFVQPTQQQQVPPSAELASQETEAGSSGQVERPSTST
AVFGSAIATGGSAGPKRAREVELEARAESADMALENPDEPPIPKKLRIIQRVGLEEENEE
GTDGEAEGSGENQETPDGSQELPDVSFPVLGEVEEEDDGVSQSVPSDHQVTPQPSDTQDS
SEERQPDVIIIDTDSSSREEEEEEAEQYEEEVEEEKDDDDDDDEDQGMGREESNEGSGDA
NEPFEGDETGPETSEPASENEESMGAIDSTSQKQADSQSGEGSSSTTESFPMAMSDPPKE
LLQPTASTTSTFSFSTSPFSPSSSLRLPQSVPRRPPHPLPPRLYIQPPGPELGLGPPPTQ
RLSAPIRRQSVGRGPQLTPGIGNMQHFFDDDDRMVPSTPTLVVPHRTDGFAEAIHSPQVA
GVPRFRFGPPEDMPQASSSHSDLGQLASQGGLGMYESPLFLAAHDEESGGRSVPTTPLQV
AAPVTLFNESHPSDAQDMASQSVPMVTTSTSHHGLAVPGGEAIPGDDGDEVFMEADSEGR
SGEASMDSQAEMDSAQPSDDASLPSTSQEPTSSSADTSSSVQPKPSGRPLAQHTLPMRTA
NRGRALIRRGGMGFLRAGRGPFGRGNLPR
NT seq
7290 nt
NT seq
+upstream
nt +downstream
nt
atggcggcagttctgcttcaagttttggagcgtacagagcttaataaactccctaaagct
gctcagaacaaattagaaaagttccttactgaccagaagaatgaaatcgaatccctcaaa
acgcagcacgagcggttcaaagcggactgtgagcagcaatactttgacgttgagaagaga
ttggcagagagtcaggagcagattgtgtttcacacccggaattaccagactctctcggag
gagaataccaaactcatcgaagagctgaacaatctgaaaggtgtggatgtggaatcgtca
gaggagaaggaatcacagcagccgagcaaagccaaatatgagattgaggccgaaaggcgg
gaactggctcgtctgcttgaaaagagaactcaagatgtggaaaatctcaccgaggatgtc
aagcggctcaatgacaagctggtggagaccaacacagccaaaatagatctacagctcaaa
ctggatgagatccaatcttctgaggtctccattcagcaccgtgagaaacgtatggagcag
gagaaggagctactgcagaatcagaacacgtggctgaactctgaactgaagaccaagaca
gaggagctgctatcggtctccagggaaaagggcaaggagatcctggagctcaagtgcagc
tttgagtgcaagaaggacgaggtcacaagacttcaaacccaagtcaccaatctgaagaag
agctgtgagaacctgcagaagcgagtggaggacctgatgacaaaactgaaagaggctaaa
gaccatcatagcaccatggaggagaagtaccgcaatgaacagaatgcccacatcaagctc
tccaacttgtacaaggggtcagcatcagatgcagagtccaagaacgaggagttgaacagg
gccgtggaggagctgcacaagctggtgaaggaggctggtgatgcaagacagaacatggag
aagaagctggcagacatggaggggtcaaagagcaaacaggaggctgagctgaaggagaag
tttaagaagatggagctagagaacgccaacctgcgtgcctcagataagaaaagaagcatg
ccagtgctcacagaggaagagttggactccatgtgtccaaccgcagctgctgtggccaag
attgtcaagcctggaatgaagttcatggagctgtacaacgcattcgtggacatccaggac
cagttgctcgttgagaagcaggagaaccggcgtgtgacgcgcgtgctggacgagatcgtg
caggaggtggaggagaaggcgcccatcctaaagcgccagcgggaggagtatgagagcatg
cagaggtccatgaacagcctctgtgccaaactggaacaggccaggacggagatccacagc
ctgcagaaagagacagatgaggccaaaaagcactgctccaacctggagaaggacaaccag
cgctctgagagagagctggaggacatgtcccagcaggtgcgcgtcctgctagtggagctg
gaggaggcgcgtggcaacccggtggtccgcgaggagacgatgaacctgagcagcagctct
gagatcatcaacccacgccaggtttccttccgcagtgtggaggagctgcagcggcaaaac
cagagcatgctggcacgtctccgggagctgggggagaagatggagagagagcagaccgag
gccaattctgcacgtgtgacccagctggaacagcagctagagaaggtccagaaggagctg
gagattataaaggagcagagaaaccagcaaaagcagctggctgactccaacggccgccag
agagacatgtaccgcatcctgctgtcccagagcaccggcttcaacctcccaccacaaggt
cctacacaggaggcagccccccagatgtacacccccagccggccctccttcccccctccc
accaggtccacccccatgagggcttcagccactgagtcttcccaggccacccaggccaag
gctgctctcaaacagttgaacgactccttcaccacatacaagaatgagaaggcggtgaac
gacaggatgctgaacgagcagaacgagaagctacaggagcagctgtcagcggtccgctcc
cagaaggccaagctctccacacagttggagttcgcctccaagagatacgagatgctgcag
gagaatgtaaacggctacaggcgggagatcgctgctctgcacgataagagccagaagatg
gccgccacggctcagaaacatgagcagatcatccacaccatgacccaggatctccgggca
gccaatgagaagctggccttggcagaggtgcgtggtgagaacatgaagaaagagagagac
atgctgaagtcagcagagtccagactgaaccaggagaaggaagccatgatggctgagcag
cgcaaccagaacctcctgctcaccaacctcaagtccatccagctgacgatggagcgtaca
gagaccgagaccaggcagcgtctgaacagccagatagagagactggagagagagctcacc
cagtttaagaagaaactggctgaggaggtggagcagaggcacatgctgggccgtaaccaa
gacgctcaactgctggaggccaagaagcagctagaggcccagtgtgccctgcaccagaag
accaaggagctgttgaagaatgctgagcagcaggctaaccttctgaaacaacagctcagc
catgctgaaagccagaaccagggttcaggtctgggccagggtcagagcctgggccagact
aacccccgggcacccatcagagcaccgttaagagctccatctcagacccagtcccaggag
gcccaggccaagctccagtcagaactagaggaggtgcgcgggcgtctgcagcaggccgag
aagcagatcagcgatctgcaggagcgcctgcagaacgcgagcactaacgtggagcagtac
cgcaccgtggtgctcagcctggaggagtccctcagcaaagagaaacaggctcgttctcct
gtggagactcgtctaaaggaggcccaggagttccagcgtgggctggagaagaagctggtg
gaggctgagaaggagaaacaggagctccgtgaggagaagaggaaggccatggatattgtg
gagaaacaggtgaatgagctgaagaggaccatgaaaaacttgcagtcagagctgcaggag
gcggaggagaggaaggctgcagccatcacccaggaacagaaggccatgcaggacagcctg
cagcagggcaagctggcagcggaggcccagaacaagtatgagcgggagctgatgctgcat
gcggctgatgtggaggcgctacaggcggtcaagaaacaaggcctgcaggggaaccagagc
aggaagcagctggaggacaaggccaaacagaccaccacccagctacaggaagctcgcacc
aactggaaccagctggagaagaaacttaaggaggacctgtccaagcagcagaagcgggca
gacgagctgcagaagcagaatggcctgctgcaccagcagatggagagcctgggagccaaa
atggctgccacagtacagcagcagcaacaggctagtagggagagcagcctcaacctgtcc
ttcagcgaagagggcaagtcccaggaacagatcctggagatcctcaggtttgtgcgtcgt
gagaaggagattgcagagacacagtttgaggtggccgaggttgagacactgcgctacaaa
caacaggttgaacaccaggaccgagagctgaaggaactacaagagagcctcaacgctgag
agagagaaactacagctgacagcgaagaccatggcccagcacgatgagagaatgaagagg
atggagaacctaaacgtgctggtggagaccaacaagatgctgaaggaggagagggagcga
ctggaacaggagctgcaccagacccaggctaaagtgcgtaagctggaggcagacatcact
cccctacaggactccaactctgagctgagtgagaagaatggcatgctgcaggctgagaag
aaactgttggaagaggacagcaaacgctggaaggcccgcacacagcaactggtgagccag
cagaaggacacagaccaggaggagaacaagaagctgcactctgagagagaggcccacctc
aaacgcatccagcagctctctgaggagactgggagactgaaggctgaggtggccaggacc
catgcgtcggttatcacagcccagagccaggcgcagaacctgaaggagaatctgggcaag
gtgaccaccgagagggatgcgaagcacctggacatccaggagaagtgcaagaccatcacg
caggtcaagaaaatcggacgacgctacaagacgcagtatgaggagctcaaagtgcagcac
gacaagctggtggcggaggcagcagccaagccagcccaggaggaggtgctgcaggctgtg
caacaggcccagcagcaggcccagcaggcctctgcccaagagatccagagcctgaaggac
tccctcagccaggctgagactaaggtcaaagacctggagggacaactgaaaaacgtacag
gagacggtgaatgagcgcaacacagagatggggcggctgaaacaggagctgacccggctc
caggaacagtctacccaggcccaggggacccagggtgaagtgacccggctgaaacaggag
ctgacccggctccaggaacagtctgcccaggggacccagggtgaagtgacccggctgaaa
caggagctgcaggagaagactgctcaggaggagtcgctacggcaacagatggccgacaag
gaggagaagaccaagaaggtcttcatgggcgccaagcaaaagatcaaccaactcaacatt
gcgaaggagcatctgaccaaggaggtggaggagctgaagcagcagcgggaggagcaggag
gtgcgtctgagtgctctcaagtcccagtatgagggccgtctgcaccgacaggaccgagag
atcagggagctccgagaccaccgtgacgaacaacctcagagagacgagtcccaggaccag
gggaaaaataagacccaggagcagcagcagagagctccagatcagaggcagatcaaccag
aggacttcccaagctgcagacaggggaagtggttcttccggctcttcagagcagcccccc
actgccaacatcaaacccaccacggtgtcgggcggtgcccccagtaaaccttcacccatc
cccgggaacaagtccacccccagggccagcatccgacccatggtgcccataaccatgccc
acccccacggccactgtcatgccccatacacagtctgaaagccaggaagtgctgcagtcc
tctgagagtggaacccccgtggaacacgtgtctgtgttcggcagcaccagcggctcggtc
cgctccaccagccctagcgtccagaacatcacgcactctcagtttcagccaatcagcagc
caggccaccgccttcgtccagccaacccagcaacagcaggtcccgccctccgctgagctg
gccagtcaggagacagaggcgggctctagtggtcaagtggagaggccctccacttctacg
gccgtatttggctccgctattgctacagggggctctgctgggccaaagcgtgcccgcgag
gtggagctggaggctcgggcagagagcgccgacatggccctggagaacccagacgaacca
cccatccccaagaagctccgtatcatccagagagtgggactggaggaggagaatgaagag
ggcactgatggagaggctgaggggtcaggggagaaccaggagactccagatggcagccag
gaactaccagacgtgtcctttcctgtactgggagaggtggaggaagaggatgacggggtg
tcccagtctgtcccctcagaccaccaggtgaccccccaaccctctgacacccaggactcc
agcgaagagcgccagcctgacgtcatcatcatcgacacagacagctccagtcgagaagaa
gaggaggaagaggcagagcagtatgaggaagaggtggaggaagagaaggatgatgatgat
gatgatgacgaggaccaggggatgggaagagaggagagcaacgaggggagcggagacgcc
aatgagccgtttgaaggagacgagacgggccctgagacctcggagcctgcctcggagaac
gaggagagcatgggagctatagactccacctcccagaaacaggctgactcacaaagtggt
gaggggagcagcagtaccaccgaatccttccccatggccatgtccgacccccccaaagaa
ctactacagcctaccgctagtactaccagcactttctccttctctacctcccccttctcc
ccctcctccagcctgcgcctgccccagtctgtcccccgccgacccccacaccccctgccc
ccacgcctctacatccagccccccggccctgagctgggcctgggacctccacccacacag
aggctgtctgcgccaatccgccggcagtctgtaggcagaggaccccagctcacgcctggg
ataggcaacatgcaacacttctttgatgacgatgacaggatggtccccagtacgcccacg
ctggtggtgccccaccggactgatggctttgctgaggccatccattctccacaggtagca
ggagttcccaggttcaggtttggtcctcctgaagacatgcctcaggccagctcgtcccac
tctgacctcggacagctcgcctcacaaggaggtctggggatgtacgagagtccactgttc
ctggccgctcacgacgaggagtctggagggaggagtgttcccaccacgcccctgcaggtt
gctgccccagtgacgctcttcaatgaatcccacccctctgatgcccaggacatggcatcc
cagtctgttcccatggtgacgacatccacgagccaccacgggctggcagtccccggcgga
gaggccatcccaggagatgacggtgacgaggtgttcatggaggcagatagtgaaggtagg
agtggtgaagcgtccatggatagccaggctgagatggactctgcccagccgtcagacgat
gccagtctgccctccacaagccaggagcccacctccagctctgccgacaccagcagtagt
gtgcagcccaagccctccggccgccccttggcccagcacactctgcccatgagaacagcc
aacaggggcagggcgctcatccgcagaggaggtatgggcttccttcgagcaggaagaggc
cccttcggtagaggtaacctaccccgctaa
DBGET
integrated database retrieval system
