Oncorhynchus tshawytscha (Chinook salmon): 112227105
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Entry
112227105 CDS
T05605
Symbol
gtf2b
Name
(RefSeq) transcription initiation factor IIB
KO
K03124
transcription initiation factor TFIIB
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
112227105 (gtf2b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
otw03021
]
112227105 (gtf2b)
Transcription machinery [BR:
otw03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIB
112227105 (gtf2b)
Prokaryotic type
Archaeal type
TFB
112227105 (gtf2b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIB
Zn_Ribbon_TF
Cyclin_N
Cyclin_C
KIF9
Sigma70_r4
RB_B
BRF2-like_C_cyclin_rpt
Motif
Other DBs
NCBI-GeneID:
112227105
NCBI-ProteinID:
XP_024247716
LinkDB
All DBs
Position
LG28:32788819..32798679
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AA seq
318 aa
AA seq
DB search
MASTSRGDVLALPKVQCPNHPDAMLVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFTNE
KATQDPSRVGDAQNPLLNGGDLSTMISKGTGAASFDEFGNSKYQNRRTMSSSDRAMLNAF
KEITTMADRINLPRNIIDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFK
EICAVSRISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLGLPKQVQMAATYIARK
AVELDLVPGRSPISVAAAAIYMASQASAEKKTQKEIGDIAGVADVTIRQSYRLIYPRAAD
LFPPDFKFDTPVDKLPQL
NT seq
957 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcgacgagccgcggagatgtcctggcccttcccaaggtgcagtgccccaaccac
ccagatgccatgctggtggaagactacagagcaggggacatgatctgccccgagtgtggc
cttgtagtgggtgacagagtgattgatgtgggttcagagtggaggaccttcaccaatgag
aaagccacccaagacccgtccagagtgggcgacgcccagaatccactcctcaacggggga
gacttgagcaccatgatcagcaagggaacaggcgcggcaagttttgatgagtttggcaac
tccaagtaccagaaccggcggaccatgagcagttcagaccgcgccatgctaaacgccttc
aaagagattaccaccatggctgaccggatcaacctaccaaggaacatcatagaccgaaca
aataacttatttaagcaagtgtacgaacagaagagcctgaaggggcgggccaacgacgcc
atcgcatcagcctgcctctacatcgcctgcagacaagaaggtgtgcctcggacatttaaa
gagatctgcgccgtgtcccgtatctccaagaaggagatcggccgctgcttcaagctgatc
ctcaaggccctggagaccagcgtggacctcatcaccaccggagacttcatgtcccgcttc
tgctccaacctaggcctgccgaagcaggtgcagatggcagccacctacattgcccggaag
gccgtggagctggacctggtgcccggcaggagccccatttctgtggctgccgccgccatc
tacatggcctcccaggcctctgccgagaagaagacccagaaagagattggagacatcgct
ggtgtggcggacgtcacaatcagacagtcgtacagactcatctacccccgcgctgccgac
ctctttcccccagacttcaaatttgacacccccgtggacaaactgccccagctgtga
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