Oncorhynchus tshawytscha (Chinook salmon): 112227214
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Entry
112227214 CDS
T05605
Name
(RefSeq) collagen alpha-4(IV) chain-like isoform X1
KO
K06237
collagen type IV alpha
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04382
Cornified envelope formation
otw04510
Focal adhesion
otw04512
ECM-receptor interaction
otw04518
Integrin signaling
otw04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
112227214
04518 Integrin signaling
112227214
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
112227214
09142 Cell motility
04820 Cytoskeleton in muscle cells
112227214
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
112227214
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
otw04147
]
112227214
00536 Glycosaminoglycan binding proteins [BR:
otw00536
]
112227214
Exosome [BR:
otw04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
112227214
Glycosaminoglycan binding proteins [BR:
otw00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
112227214
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
112227214
NCBI-ProteinID:
XP_042163907
LinkDB
All DBs
Position
LG28:35962105..36031146
Genome browser
AA seq
1674 aa
AA seq
DB search
MSPFACWVTFCSLPIWWIVLLHISEQRANAGETLGSCDGRDCSVCSCLPAKGARGAPGKL
GKQGPQGPDGIGGSAGPHGEKGRRGVEGPPGLDGKKGERGPTGHPGFPGIDGVNGHVGAG
GNPGLPGLDGCNGTRGQTGIPGVHGTNGFPGPRGYLGPKGTKGEPVYDVSGPGLPGDPGP
PGRSGSPGHVGPKGHTGPAGPNGNDGPDGPPGARGEPGDTGRSLPGIKGDEGDQGQPGPP
GPEEIVEPPDLFYPKGDKGDKGVPGPCGPRGITGEKSDEGLKGETGIRGFPGPRGYIGST
GLPGTPGPQGYPGDQGFPGLIGRSGPTGFPGDKGIRGPASQIYHNSTVAGYPGDPGPQGP
RGAPGDIGEMGINGPPGPPGVLSSTGQPGQLGYPGLPGPKGLKGEPGRYYTIEPIPGQPG
ERGRPGAKGFRGPPGRPGCGGIYCVPGEPGVRGDDGDTGYPGLTGYKGEKGYNGECECTY
ENGHRGIPGPPGPRGPLGYDGLPGHSGEKGDHGYNGDPGSQGSHGNPGRPGYNGVKGQKG
ESYVTNYKGAKGDPGFNGPNGPHGATGRPGSDGFPGAVGDPGPPGDGYGGLVGDKGYPGL
HGPEGPPGRPGPSGPGAPGRHGPQGPPGDVGLPGPPGQTGQPGPLGEVLPCGPSNPGLPG
LKGLLGPPGNPGPPGPLGFPGPTGPLGPQGMRGDDGTDGGTGPPGHQGCVGDNGDPGQPG
INLDGPPGLRGPPGSPGWPGPPGDTFNTGPGPVGPPGLPGLLGPKGDPGLPGIPGPPGGS
GPYGGVGYKGSKGDTGDPGLNGPPGPTECREKGAVGPPGASGPPGVRGPSGFRGDKGHKG
AMGPPGRGVKGPAGIPGPTGPPGPIGVKGFSGSPGVPGFPGVTGTKGPRGYPGRDGSAVP
GTPGRPGNPGSRGRQGERGFTGRDGQDGDQGYKGAKGTNGHRGPPGSPGPVGVITVKGQK
GSEGPPGEDGFTGARGSKGSRGSPGKPGGNGQDGPPGYEKGLPGQPGRPGFPGPPGPRGP
KGLSGIIGFPGPVGDKGDPGHTGPPGNPGLPGMTGLQGDPGDSIGQPGLPGPPGPPGECG
TLDPKGDPGDPGSPGPRGSPGQPGVHGARGPLGGPGFPGPSGPPGRPGSPGPPGGILGGQ
GPNGNPGLPGPPGFPGPPGLHGLNGLQGQKGEKGARGPDVLGPRGPSGYPGVKGHTGSQG
PPGTSYPGSKGLRGPPGYQGPKGVTGEPGGSGGECSECHRGPNGEPGYEGIHGPPGPPGE
PGPAGTAEPSPGDPGPQGPPGPNGHKGQRGPPGPLGPTDYSGSQGPKGARGPVGHMGPNG
TRGRPGAYGLLGPKGDKGKPGDAGPKGLPGQVLDGVVTTQEPYRGIHGPSGPSGPNGPPG
KAGPRGNPGPHGPKGPAGSHGPPGRNGPPGPPGPLGDPGDHGQQGFVGHQGPPGSQGDRG
YPGSTGSVSSGFLLVIHSQSVEVPVCPEGSSPLWTGYSLFYLEGQERTHTQDLGQAGSCL
RIFSTMPFSYCNTGTCDYASRNDKSYWLSTTAAVPMMPVSGHDIRAHISRCAVCETPSPA
VAVHSQDYIAPTCPPGWRSLWAGYSFLMHSGAGDEGGGQSLTSSGSCLRDFRAQPFVECQ
GPRGTCHYFANVYSFWLTHVSLDEQFGPGPVPSVLKAADKQRQQASRCHVCTKG
NT seq
5025 nt
NT seq
+upstream
nt +downstream
nt
atgagtcccttcgcttgctgggtgaccttctgttctctgcctatctggtggatcgtcctg
ctgcacatctctgaacagagggccaatgctggagagacgctgggctcgtgtgatggcaga
gactgctcagtgtgcagctgtctccccgccaagggagcccggggggccccagggaagctg
gggaagcaggggccacagggcccagatggcatcgggggctccgcagggcctcacggagag
aaggggaggaggggtgtcgagggaccacctgggctggatgggaagaaaggggaaaggggt
ccgactggtcacccaggatttcctggtatcgatggtgtcaatggtcacgttggtgctggg
gggaatcctggtctgccggggctagacggctgtaacgggaccaggggacagacggggata
cccggtgttcatggcacgaacggattccctggacccaggggatatctcggtcccaaagga
acaaaaggggagcctgtctacgatgtatctggacctggccttcctggcgaccctgggcct
cctggaagatctggatcacctggccatgtgggacccaagggtcacacaggccctgctgga
cctaatggaaatgatggtccagacggtccacccggggctagaggagaaccaggtgacact
ggcagatcactgccgggcattaaaggtgatgagggggaccagggtcaaccagggcctccg
gggcctgaggagatcgtcgagcctccagaccttttctaccccaaaggagacaagggggat
aaaggggttcctggaccatgtggacccagaggcataactggagaaaaatccgatgaagga
ctaaagggagaaactggaatccgtggctttcctggtcctcggggttacattggatctacc
ggcctgcctggaacgcctggaccacagggctatcctggagaccaagggtttcctggtctg
atcggcaggtcaggaccaacgggtttcccaggagacaaaggcatcagaggaccggcgagc
caaatataccacaattccactgtagcaggttaccctggtgatcccggcccccagggtcca
aggggagcaccaggtgacattggagagatgggcattaatggacctcccggaccaccaggg
gtattaagctccacaggtcaaccagggcagctaggttaccccgggctccctggtcctaag
ggtttaaagggggagccaggaaggtactacactatagagccaataccaggacaaccaggt
gaaagagggcgtcccggagccaaggggttcagaggccccccgggtcgtccaggatgtgga
ggcatttattgtgttcctggtgagccgggtgtacgaggagacgatggcgataccggatat
ccaggattaacgggatacaaaggagaaaaaggctacaacggtgagtgtgagtgtacgtac
gagaatggtcacagagggatcccaggtcctccgggcccccgcggacccctagggtatgac
gggctgccagggcacagcggagagaaaggtgaccatggatataatggggaccctggctca
caaggatcccacggcaacccaggcaggcctggttacaatggagtgaagggacagaaggga
gagtcctatgtgaccaactataaaggtgcgaagggtgacccgggcttcaatggccccaac
ggaccgcatggcgccaccggtcgaccaggatccgatggcttccctggcgctgtgggagac
cccggacccccgggtgacggttacggtggcttggtaggtgacaaaggctacccagggctc
catggtcctgaaggccccccaggcagaccgggcccctcaggccctggtgctccaggccgt
catggcccccaagggcccccaggggatgtgggcctcccaggtccccctggacaaactgga
caacctggacctctaggcgaggttctgccctgtggcccttccaaccctggcctacctggc
ttaaagggtctacttgggcccccagggaatcctgggccaccaggaccacttggtttccca
ggtcccacaggtccccttggacctcaaggcatgagaggagatgacgggacagatggagga
actggaccaccaggacaccaaggatgtgttggagataatggtgaccctggtcaacctgga
atcaacctggacggaccaccaggactccgtggaccaccaggctctccaggctggccggga
cctccaggagacaccttcaacaccggacctggtcccgtgggtccacctggactacctggt
ttactgggacccaagggagatcctggtttgccaggcatccctgggcctccagggggatca
ggcccgtacggaggtgtgggttacaaggggtcaaaaggagacactggggacccaggactg
aacggtcccccagggccaacagaatgtagagagaaaggagctgttggcccaccgggagcc
tcaggaccaccaggagtcaggggcccatcgggtttccgtggtgataaaggacataagggt
gcgatgggtcctcctggacgtggagtgaagggaccagcagggatccccgggcctactggt
cccccgggacccattggtgtcaaaggtttcagtgggtcaccaggtgtcccgggcttccct
ggtgtaacagggaccaaagggcccaggggatatcctggtagagatgggtcggctgttcct
ggtacaccgggtcggcctggaaacccaggatcccgcgggaggcaaggggagaggggtttt
acaggacgtgacggtcaggatggagaccaggggtacaaaggagccaaaggtacaaacggt
cacagaggtccccccggaagtcctggcccagtaggagtcataaccgttaaaggacagaag
ggctctgaaggaccaccaggagaggatggcttcactggagccagaggttccaagggctca
cgtgggtcaccaggtaaaccaggggggaatggacaggatggtcctcctggatatgagaaa
gggctcccaggacaacctggcagacctggtttccctggaccccccggacctcgaggacct
aaaggcttgagtggtataattggtttccctggaccagtcggtgataagggggaccctggg
cacacgggccctcctgggaatccaggccttccaggaatgacaggcttacagggtgaccca
ggagactctataggacaaccaggactacctggaccaccgggtcctccaggagaatgcgga
accttagatccaaagggagacccaggagatccagggagcccaggacccagaggatcacca
ggacagcctggtgtccacggagcccgaggaccactgggtggcccaggtttccctggtccc
tcaggtccgccgggtcgtccaggctccccagggcctcccggaggaattctcggaggtcaa
ggccccaatggcaatcctggactgcccggtcctccaggtttcccgggacccccagggctg
catggtctgaacgggctccaaggccaaaaaggagagaagggagccagaggaccagatgtg
ttgggcccacgagggccatctgggtaccccggagtcaaaggccacacaggctcccaggga
cccccgggaacttcttaccccggatctaaaggcctaaggggccctccaggctaccaagga
ccaaaaggagtcactggtgagcccggtggttcaggtggagagtgctcagaatgtcacaga
ggacccaacggagagccaggatacgaaggcattcatggacctccaggaccacccggtgaa
ccgggtcctgctggtactgcagagccatctccaggagacccaggcccccaagggccacca
gggcccaatggccataaaggacagagaggccccccaggacccctagggccaacagactac
tcaggatcacaaggacccaaaggtgctagaggccctgtgggtcacatgggccccaacgga
acaagaggtcgtccaggcgcctatggcctcctggggcccaaaggtgacaaaggcaaacct
ggggatgcaggtcccaaaggcctgcccggtcaggttttggacggtgtcgttaccactcag
gaaccctaccgtgggatccatggcccctcaggtccatcaggtccaaatggtcccccggga
aaggctgggccccgtgggaaccctgggcctcacggtcctaagggcccagctgggtcacac
gggcccccagggagaaatggacctccaggtccacctggacctttaggagacccaggcgat
catggacagcaaggttttgtgggacatcagggtcctccgggttctcagggtgaccgtggc
taccccggttccactggctctgtgagttcaggcttcctgctggtgatccacagccagtcg
gtggaggtccctgtgtgtcccgagggcagcagccccctgtggaccggctatagcctgttc
tacctggaggggcaggagaggacacacacacaggacctgggccaggccggctcatgtctg
cgtatcttcagcaccatgcccttctcctactgcaacacaggtacctgtgactacgccagc
cgcaacgacaaatcctactggctttccacgaccgctgccgtgcccatgatgcccgtgtcg
ggccacgacatccgcgcccatatcagccgctgtgccgtgtgtgagacaccctcacccgct
gtggcagtgcacagccaggattatatcgcccccacctgcccccctgggtggagaagtctg
tgggctggctactccttcctcatgcactctggagcgggcgacgagggtggcggccaatct
ctgacctcatccggcagctgcctgcgagacttccgtgcccagccctttgtggagtgccag
ggcccgcggggcacatgccactacttcgccaatgtctacagcttctggctgacccatgtt
tccctggacgagcagtttggccccggtcccgtccctagcgtgttgaaggctgccgataaa
cagcgccagcaggccagccgctgccacgtgtgtaccaagggctga
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