Oncorhynchus tshawytscha (Chinook salmon): 112227462
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Entry
112227462 CDS
T05605
Name
(RefSeq) uncharacterized protein LOC112227462 isoform X1
KO
K05769
Rho guanine nucleotide exchange factor 4/29
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09140 Cellular Processes
09142 Cell motility
04810 Regulation of actin cytoskeleton
112227462
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112227462
Membrane trafficking [BR:
otw04131
]
Others
Rho GTPase associated proteins
Rho guanine nucleotide exchange factors (GEFs)
112227462
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RhoGEF
PH
SH3_1
SH3_2
SH3_9
Motif
Other DBs
NCBI-GeneID:
112227462
NCBI-ProteinID:
XP_042164351
LinkDB
All DBs
Position
LG29:31145804..31248992
Genome browser
AA seq
2445 aa
AA seq
DB search
MDTQCTERSSPPTTETERTSPPTTETESSSPPTTEAERISPPTTETESSSPPTTETERTS
PPTTEAERTSPPTTETERTSPPTTEAEWSSPPTTEAERSSPPTTEAEWSSPPTTEAERSS
PPTTEAERSSPPTTDAERTSPPTTEAERTSPPTTEAERTSPPTTEAEWSSPPTTEAERTS
PPTTEAERSSPPTTEAEWSSPPTTEAERSSPPTTEAEWSSPPTTEAERTSPPTTEAEWSS
PPTTVKYNPAPHSLETTGKVHSASPCVGIPNGPVTKTQPQTFLSATKTHVEACGSCAHCQ
EEHKVCVTTRNSAEPPEPSGTEETVNGFCSIMSSVEAGHPFEVGLPVEVGLPPLLDTRGP
IPLSNILSPDLSLSPSQNRKGINQLESQLASPVSPVPAPGLGVEGMTEIRPLKKHAVQTQ
GLIPELQDQRGSSTETPRDSEPSPGEITRDEGWLGEGYTSVELQPASAHPQSDAVGWSEE
CLPTHPRSLPHIDWPPPSDRSGSEDSEHSQLLSKTSTREDRTGPTHSLPGVREEEEEEEE
EEEEDCHVYSQQEQAVESTSCPESAQPNTVKTAEFSDHTDTDSDHVGLSSTEETEDAIFP
YSPTGVFVEITSDLYVDLCTQGVSSDIGQGSNQPTETEPLQGDSTEPPALDQETVPLRTI
EITVGADFSVTIGTESPVTVGTDSPVTVGTDSPVTVGTDSPVTVGTDSPVTVGTDSPVCK
EQVHSRRDHLEIHHRIPEPPSPCPVPPSIISLSSLSDSNNHTKASERLWSGSLCMRGQMP
EQWSSEVEIKVAHQSRLKECGDKTDGESLSLTEPATLTSKFLGETNDTLDSALEDPPEDS
EKFLSLVDYHPCWCSDDSAVSWLEDEYPFSLAEVEELERLQRESYRDAPNQNHTDWRGDI
SNHTDTTDWRGDISNHTDTTDWRGDISNHTDTTDWRGDISNHTDTTDWRGDISNHTDTTD
WRGDISNHTDTTDWRGDISNHTDTTDWRRDISNHTDTTKWRGDISNHTDTTDWRGDISNH
TDTTDWRGDISNHTDTIGCREANCAANSTTGLSEPLFSYLETRSLLLDSVEKEKGQQPIP
HQSPKPPWDRDRQECSNSPETLGLEDSWFTEEDSSYRSYLQTSSHPTLLQQDREVRIVRY
PYPGVSLNLLSLTSLETILEADPDHSLDHSGTVEDETGDEEEDKEWRKIVRIRPTEEDRG
TVLLSGDIIISYVPTFSTSSCRPEDLSSIESSEHQLVLSTFDPDDIRVVTLPHDRDASGN
ERCSSPTPTSVSYDFDTTSTNSEETEESILPVSGGNTNLHKPMKSKSKGVRAGSTKSSKF
SVFSKMPSFRKKNRLKNTKVDSSPRDSPDLGLGRELGGDASDNDSVFLTVQQAFSSGPVG
CYETEEEDYSFFPSTPRTRHVRLLFREGSSSPDTPLTSQPGGLRHNQTGAPEGLHGYKRS
KSSDSLNLRMRFAQAHKSLSGLFESRSMDKENEEEQGSVETGSEGKVGRAKQSWRRLRAK
EAELVRSTLSVPVGDGVAGEDGGGLRTPRQIHSDYASRSASGSVLSVPGSPSSLRALNLT
DHFTKRDLQDSQRRSGANTPQGCKLDGERREGKVPPKDLSINFSDSGPPYSQDSEAPPAN
ESSALSTMSPASLAALANQLSWSPGGGYESTVSSMVATPDTPVRPMSPKPHSPRPAAQHR
SICYPPTVSARASVLSLLLMGQSASVEGLSDPPEKPKTLKPRAGPLDSSSLSPLEEREVD
SLLTPMFFKQFETSQDGCRPCSQTGGGGKRLSELKTPGPSPDTTALGLRPPLGHRPDRDP
RRHRCCSDDLWIEEETRRKRKLVRVMRGSLGQLNTHCPEELHKSHASVSLSTMEVFSGMI
LKSHCFSQSTPIGLDCLGWRRRTSYPLPDGGGEKTSLGLGDDLGSDEDLFEEFRSSRHHF
GHPGGGGEQLAINELISDGSCVYAEALWDHVTMDDQELGFKAGDVIEVVDATNKEWWWGR
ILDSEGWFPASFVRLRVNQDEPMEEYLAQLEKPGAVENDQPGVGLFLGPGLPCKEQMRTN
VINEIMITERDYIKHLKDICEGYIKQCRKRIDMFTEEQLLCIFGNIEDIYRFQKKFLKGL
EKRFNKEQPHLSEIGSCFLEHQTDFQIYSEYCNNHPNACVQLSRRMKTNKYVFFFEACRL
LQKMIDISLDGFLLTPVQKICKYPLQLAELLKYTNPQHRDYRDVEAALNAMKNVARLINE
RKRRLENIDKIAQWQRSIEDWEGEDILSKSSDLIFSGELMKISQPQARSQQRMFFLFDHQ
MVYCKKDLLRRDMLYCKGRMDMDQMEVVDVEDGKEKDFNVSVKNALKLCSLAGDEVHLLC
AKKPEQKQRWLRAFQDERRQVQHDRETGFSITEVQKKQAMLNACKSHPAGKPKAVTRPYC
DFLLRQKQPSLPSSVPQQQVFMLAEPKRKATTFWQNIGRLTPFKK
NT seq
7338 nt
NT seq
+upstream
nt +downstream
nt
atggacacacaatgcacagagaggagtagtccacccaccacagagacagagaggactagt
ccacccaccacagagacagagagtagtagtccacccaccacagaggcagagaggattagt
ccacccaccacagagacagagagtagtagtccacccaccacagagacagagaggactagt
ccacccaccacagaggcagagaggactagtccacccaccacagagacagagaggactagt
ccacccaccacagaggcagagtggagtagtccacccaccacagaggcagagaggagtagt
ccacccaccacagaggcagagtggagtagtccacccaccacagaggcagagaggagtagt
ccacccaccacagaggcagagaggagtagtccacccaccacagacgcagagaggactagt
ccacccaccacagaggcagagaggactagtccacccaccacagaggcagagaggactagt
ccacccaccacagaggcagagtggagtagtccacccaccacagaggcagagaggactagt
ccacccaccacagaggcagagaggagtagtccacccaccacagaggcagagtggagtagt
ccacccaccacagaggcagagaggagtagtccacccaccacagaggcagagtggagtagt
ccacccaccacagaggcagagaggactagtccacccaccacagaggcagagtggagtagt
ccacccaccacagtgaaatacaacccagcaccacacagtttagaaaccacagggaaggtt
cattcagccagtccatgtgtgggtatccccaacggacctgtcacaaagacccagcctcag
accttcctcagtgctacaaagactcacgttgaggcatgcggatcatgtgcccactgccag
gaagagcacaaggtgtgtgtcacaaccagaaactcagcagagccacctgaaccgtcgggg
acagaggagacggtgaatgggttctgttcaatcatgtcgtccgtggaggctggacatcct
tttgaggtgggacttcctgtagaggtgggacttcctcccttgctagacacccgtgggccc
atacctctttccaacatcctgtcacctgatctgtctctctcaccatcgcaaaacaggaag
gggatcaaccaattggaatcccagttagcctcaccggtctcacctgtcccagctcctggg
ctgggcgttgaaggaatgacagagatacgaccactgaagaagcatgctgttcaaacccag
ggcctaatccctgagctccaggaccagaggggctccagcacagagacacccagggacagt
gagccatcacctggggagattacgagggatgagggctggctgggggaaggttatacctcc
gtagagctccagcctgcttctgctcatccccagtctgacgctgtggggtggagtgaggaa
tgcctgcccacccacccacgctccctcccccacatagactggccgcctccctctgacagg
tcaggatcagaagactcagaacactcacagctgttatcaaagacctcgactagagaggac
aggacaggaccaacccattccctgcctggggtgagagaggaggaggaggaggaggaggag
gaggaggaagaagattgccatgtttacagtcaacaggaacaggcagtagaaagcacatcc
tgccctgaatcagcacagccaaacactgttaaaacagcagagttttctgaccatacagac
acagactctgaccatgttgggctgtcaagcacagaggagacagaggatgctatattcccc
tacagtcctacaggagtcttcgtagagatcactagtgatctgtatgttgatctctgcaca
cagggtgtttctagtgacataggccaagggtcaaaccaacctacagagactgagcctctt
cagggagacagcacagaaccacctgccttagatcaggagactgtaccactgaggacgata
gagataactgtgggagcagacttttctgttaccataggaacagaatctcctgttaccgtg
ggaacagactctcctgttaccgtgggaacagactctcctgttaccgtgggaacagactct
cctgttaccgtgggaacagactctcctgttaccgtgggaacagactctcctgtgtgtaaa
gaacaagtccatagccgccgggatcacctagagatccaccacaggatccctgagcctccc
tctccctgccctgtgccaccctcaatcatttctctgtcctccctctctgactccaacaac
cacaccaaggccagtgaaaggttgtggtcagggtctctctgtatgaggggccagatgcca
gagcagtggtcctctgaggtagagataaaggtagcccaccagagcaggttaaaggagtgt
ggggataaaactgatggggagtccctttccctgaccgagcccgcaacgttaacctcgaaa
ttcctgggggagaccaatgacaccctggacagcgctcttgaagacccccctgaggattct
gagaagttcctgtccctcgtggactaccacccttgctggtgcagtgatgactcagccgtg
tcctggctggaggatgagtatcccttcagcctggctgaggtggaagagctggagaggctt
cagagagagagttacagagacgcccctaatcagaaccatacagactggagaggagacatc
tctaaccatacagacactacagactggagaggagacatctctaaccatacagacactaca
gactggagaggagacatctctaaccatacagacactacagactggagaggagacatctct
aaccatacagacactacagactggagaggagacatctctaaccatacagacactacagac
tggagaggagacatctctaaccatacagacactacagactggagaggagacatctctaac
catacagacactacagactggagaagagacatctctaaccatacagacactacaaagtgg
agaggagacatctctaaccatacagacactacagactggagaggagacatctctaaccat
acagacactacagactggagaggagacatctctaaccatacagacactatagggtgtagg
gaggctaattgtgctgcaaacagtacaacaggcctctctgaacccttattttcctacctg
gagaccagaagcctgctattggacagtgtggagaaggagaagggccagcagcccattccc
caccaatctcccaagcctccctgggacagagacagacaggagtgtagcaactcacctgag
actttaggattagaggacagttggtttactgaggaggacagctcatacagatcctacctc
cagaccagctctcaccctaccctcctgcagcaggatcgtgaggtgaggatcgtgaggtac
ccctatcccggcgtcagtctcaacctgctctcccttactagcctggaaaccatcctagag
gctgatcccgaccactccctggaccactctgggacagtggaagatgagactggggatgag
gaggaagataaggagtggagaaagattgttaggataaggcccactgaggaggaccgaggc
accgttcttctgtctggtgacatcatcatatcctatgtgcccactttcagcacgtcgtcg
tgtcgccctgaggacttgtccagtatcgagtcgtcagagcaccagctggtcttgtcgacc
tttgaccccgatgacatcagggtcgtgaccttaccacacgacagggacgcctcgggcaac
gaaagatgctccagtcccacccccacctctgtgtcctacgattttgacaccaccagcact
aacagtgaggagacggaagagtccatcctgcctgtctcgggggggaacaccaacctccac
aaacccatgaagagcaagtctaaaggagtccgggcggggagcaccaagagctccaagttc
tctgtcttctccaagatgccttccttcaggaagaagaacaggctgaagaacaccaaggtg
gacagctcgccccgggactcacccgacctgggcctgggaagggagctggggggagacgcc
tcagacaacgacagtgtctttttgacggtccagcaggccttctcctctggtccagtgggt
tgctacgagacagaggaggaggactacagcttcttcccctccacgcctcgcactcgccac
gtccgcctgctcttcagggaggggtccagcagcccagacaccccgctgacctcccagccc
ggaggtctcagacacaaccagactggggcccccgagggcctgcacggctacaagaggagc
aagagctctgacagcctcaacctccgcatgcgcttcgcccaggcccacaagtccctatct
ggcctgtttgagtctcgctccatggataaggagaacgaggaggaacaggggagcgttgag
acagggagtgaagggaaggtggggcgagccaaacagtcctggaggaggctgagggccaaa
gaggctgagctggtgaggagtaccctgtctgtcccggtcggggatggggtcgcgggagag
gacggtgggggtttgaggacgcccagacagatccacagtgactatgcatcccgctcggcc
tcaggctcagtgctcagtgtccctgggtccccctcttctctcagggctctgaatctcacc
gaccacttcaccaagagagacctacaggacagtcaaagaaggtccggggccaacaccccg
cagggctgcaagttggatggcgagaggagagaagggaaagtcccgcccaaagacctgtca
atcaacttctcagactccggaccgccgtactcgcaagactctgaggctccgcccgcaaat
gaatccagcgccctgtcgaccatgagccccgcctccctggctgcattagccaatcagctg
tcctggtccccagggggaggctatgagagcacagtgtctagcatggtagctacaccagac
accccagtgagacccatgagccccaagccccacagccccagacctgctgcccagcacagg
tctatctgctacccccccactgtctctgcccgggcctcagtcctgtccctgctcctcatg
ggccagtcagccagtgtagagggcctgtctgacccgccagagaagcccaagaccctgaag
ccccgagctgggccgttagactcctcctccctcagtccattggaggaaagagaagtggac
agtctgcttacacctatgttcttcaaacagtttgagaccagtcaggatggatgtagacct
tgcagccagacagggggaggagggaagaggctatcagagctgaagactcctgggccttca
ccggatactactgccttaggcctcagaccaccactaggccacaggccggacagggatccg
agacgccaccgctgctgctcagatgacctgtggatcgaagaggaaacgagacggaagcgg
aagctggtccgagtgatgagaggaagcctgggacaactcaacacacactgtcctgaagag
ctccacaaatcgcatgcttcagtgtccctgtcgaccatggaggtattctctgggatgatc
ctgaagtcccactgcttctcccagagcacccccatcggtctggactgtctgggctggaga
cgacgcacctcctaccccttaccagacgggggtggagagaagaccagtctggggctgggt
gatgatctaggcagtgacgaggacctgtttgaagagttccgcagttccagacatcacttt
ggacacccagggggaggtggggaacaactggccataaatgagctgattagcgatggcagc
tgtgtgtacgccgaggcgctgtgggaccatgtcactatggacgaccaggagctgggcttc
aaggcgggggatgtcatcgaggtagtggatgccaccaacaaagagtggtggtggggacgc
attctggacagtgagggctggttcccagccagcttcgtccggttgcgtgtgaaccaggat
gagcctatggaggagtacctagcccagctggagaagcctggggctgtggagaatgaccag
ccaggcgtgggcctgtttctgggaccaggcctgccttgtaaggaacagatgaggactaat
gtcatcaatgagatcatgatcacagagagagactacatcaaacacctcaaagacatctgt
gaaggttacatcaagcagtgccgtaagaggatagacatgttcacagaggagcagctgctg
tgtatcttcggaaacatcgaggacatctaccgcttccagaaaaagttcctgaaaggtctg
gagaagaggttcaacaaggagcagccgcacctcagcgagatcggatcctgcttcctggaa
catcaaacagacttccagatctactcggagtactgtaacaatcaccccaacgcctgtgtg
cagttgtccaggcggatgaagaccaacaagtacgtgttcttcttcgaggcttgtcgtctg
ctgcagaagatgattgacatctcgctggatgggttcctgctcacgcccgtccagaagatc
tgcaagtaccctctgcagctggccgagctactgaaatacaccaacccccagcacagggac
tatagggacgtggaggctgccttgaacgccatgaagaacgtggccaggctgatcaacgag
agaaagcgacgattggagaacatcgacaagatcgcccaatggcagcgctccatagaggac
tgggagggagaagatatcctcagtaaaagttcagatctgatcttctctggagagctgatg
aagatctcccagcctcaggctaggagccagcagcgcatgttcttcctcttcgaccaccag
atggtctactgcaaaaaggacctcctgcgcagggacatgctgtactgtaagggtcgtatg
gacatggaccagatggaggtggtggatgtggaggacgggaaggagaaggacttcaacgtg
tcggtgaagaacgctctgaaactgtgctcgctggcgggtgacgaggtccacctgctgtgt
gccaagaagcctgagcagaaacaacgctggctccgagccttccaggacgagaggaggcag
gtgcagcacgaccgcgagacaggattctctatcactgaggtccagaagaaacaggccatg
ctcaacgcctgcaaaagccatccagctgggaagcccaaagcagtgacacggccctattgt
gacttcctgctccgtcagaagcagccatctctgcccagcagcgttccccagcagcaggtc
ttcatgctggctgagcccaaacgcaaggcaaccaccttctggcaaaacatcggcagactg
acgcctttcaagaagtga
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integrated database retrieval system
