Oncorhynchus tshawytscha (Chinook salmon): 112227492
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Entry
112227492 CDS
T05605
Name
(RefSeq) LOW QUALITY PROTEIN: PAN2-PAN3 deadenylation complex subunit pan3
KO
K12572
PAB-dependent poly(A)-specific ribonuclease subunit 3
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112227492
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
otw03019
]
112227492
Messenger RNA biogenesis [BR:
otw03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
112227492
mRNA degradation factors
3'-5' decay
Pan complex
112227492
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pan3_PK
zf-CCCH
zf-CCCH_4
zf_CCCH_4
Torus
Pkinase
zf-CCCH_2
Motif
Other DBs
NCBI-GeneID:
112227492
NCBI-ProteinID:
XP_042164593
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Position
LG29:complement(23961297..23977061)
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AA seq
790 aa
AA seq
DB search
MNSGLPASAAPLGGVGIACVKVKFCRYYAKDKTCFYGDECQFLHEEPSMASMSLHSGASP
VPLSMSGGAVTYPLSAPPACPVGVPNVPKKGDSLGPAGTVLEGQMLTIPGMEGGTLSDAN
LTNSYFSSSFIGVNGFGSPAESKYSIMQRITNSSSSPSLLDDGAKNFSHSAHDPGNSPIS
SLFSDFGALSISQRRKGPNPTANEFIPKGVPRMATMVQSSGPAFPSPLFPHLGLSSSTAL
APGMSLSAGSTPLHSPKITPQTSPAPRRRSHTPNPNNPNPANYMVSTSVSDQGAHIIQKE
TVGGTTYFYTDNTPAPMAGMVFPTYHIYPPTAPHVAYMQPKANAPSFFMADELRQELINR
HLITMAQLDQSENTGVPSEVDSYHSLFPLEPVPPPNRLQKTSNFSYITSCYKAVNSKDDL
PYCLRRIHGFRLVNTKCMMLVDMWKKIQHSNAVTLREVFTTKAFGDHSLVFSYDFHAGAE
TMFSRHFNDPAADSYFTKRKWGQHEPTPPRQHAGLLPESLIWAYIVQLSSALRTIHTAGL
ACRVMDPSKILITGKTRLRVNCVGVFDVLTFDNSQTNHVTLMPQYQQADLISLGKVVLAL
ACNSLAGIQRENLQKAMELVSINYSSDLKNLILYLLTEQSRLRSVNDIMPMVGARFYTQL
DASQMRNDVIEEDLAKEVQNGRLFRLLAKLGTINERPEFQKDHTWSETGDRYLLKLFRDH
LFHQVTEAGTPWIDLSHIVSCLNKLDAGVPEKISLVSRDEKSVLVVTYSDLKRCFDNTFQ
ELQQAAVGPL
NT seq
2373 nt
NT seq
+upstream
nt +downstream
nt
atgaacagtggactcccagcttcagctgctccactcgggggtgtcggaatagcctgcgtc
aaggtgaagttctgccgatactacgcaaaggataagacttgcttttatggggacgagtgt
cagtttttgcatgaggagccgtctatggcaagcatgtcccttcacagtggagcaagtcct
gtccctttatccatgtctggaggagccgtgacgtatccgcttagtgcacccccggcctgc
ccggttggggtaccgaacgtccccaaaaagggcgactctctggggcctgcaggcacggtt
ctggagggacagatgttaaccatccctgggatggagggcgggaccctgagcgatgccaat
ctgaccaactcctacttcagcagcagcttcattggggtcaacggcttcgggagcccggca
gagtctaaatactctatcatgcagagaatcaccaacagcagcagttctcccagtctcctt
gacgacggtgccaagaacttcagccacagcgctcacgatccagggaattcccccatttct
tcactcttcagtgactttggtgctctgagcatatcacaaaggagaaagggtcctaaccct
acagccaatgagttcatccctaagggggttccccgcatggccactatggtccagtccagt
ggtccggccttcccatcacccctcttcccccacctcggcctcagcagctccaccgccctc
gcacctgggatgtctctctctgcggggtccacccccctccactcccctaaaatcaccccc
caaacctcacctgcccctcgccggcgtagccacacccccaaccccaataaccccaaccca
gccaactacatggtgtccaccagtgtgtctgaccagggggcccacatcatccagaaggaa
acggtgggggggaccacctatttctacacggataacacccccgctcccatggccgggatg
gtgtttcctacctaccacatctacccccccactgctccccacgtggcctacatgcagccc
aaagccaacgccccgtccttcttcatggctgatgagctccgacaggagctgattaacaga
catctgattaccatggctcagcttgaccagtcagagaacacaggtgttccatctgaggtg
gatagctaccacagcctgtttcccctggagcctgtcccccctcccaaccgcctgcagaag
accagcaacttcagctatatcacttcctgctacaaggctgtcaacagcaaggacgaccta
ccgtactgcctgaggaggatacatggtttcaggctggtgaacactaagtgtatgatgctg
gtggacatgtggaagaagatccagcactccaacgctgttaccctgagggaggtcttcacc
accaaggcctttggagatcactcgttggtgttctcctatgacttccatgcgggggcagag
accatgttcagccggcacttcaacgaccccgcggccgactcctacttcaccaagaggaag
tggggacagcacgagcccactccaccgcggcagcacgcaggtctgctccccgagtctctg
atctgggcctacatcgtccagctgagctcagccctcagaactatccacactgctggtctg
gcctgtagggtcatggaccccagcaagatcctcatcaccggcaagaccaggttacgagtg
aactgtgtaggggtgtttgatgtcttaacgtttgacaacagtcagaccaaccatgtgacc
ctcatgccacagtaccagcaagcggacctgatatccctgggcaaggtggtgttggccctg
gcctgtaactctctggctggcattcagagagagaacctgcagaaggccatggagttggtg
tctatcaactactcatcagacctcaagaacctcatcctgtatctgttgacagagcagtct
aggctgcgcagcgtcaatgacatcatgcccatggttggagctcgcttctacacacagctg
gatgcatcacagatgaggaatgatgtcatcgaggaggacctggcgaaggaggtccagaat
ggtcgtctcttccgtctgttggccaaactgggcaccatcaacgagagaccagagtttcag
aaggaccatacgtggtctgagacgggggaccggtacctgctgaagctgttcagagaccac
ctgttccaccaggtgaccgaggctggaaccccctggatagacctcagccacattgtttcc
tgcctcaacaaactggacgcgggcgtgcctgagaagatcagcttagtgtctcgggatgag
aagagtgttctggtggtgacctactcggacctgaagcgctgcttcgacaatacctttcag
gagctgcagcaggccgctgtcggaccgctgtag
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