Oncorhynchus tshawytscha (Chinook salmon): 112227585
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Entry
112227585 CDS
T05605
Name
(RefSeq) protein scribble homolog isoform X1
KO
K16175
protein scribble
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
112227585
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Ortholog
Paralog
GFIT
Motif
Pfam:
PDZ
LRR_8
PDZ_6
LRR_14
LRR_4
PDZ_2
LRR_1
LRR_13
LRR_9
LRR_LRWD1
Motif
Other DBs
NCBI-GeneID:
112227585
NCBI-ProteinID:
XP_042164361
LinkDB
All DBs
Position
LG29:11908636..12010002
Genome browser
AA seq
2091 aa
AA seq
DB search
MLKCIPLWRCNRHVESVDKRHCNLQNVPDEIFRYSRSLEELLLDANQLRDLPKPFFRLLN
LRKLGLSDNEIQRLPPEVANFMQLVELDISRNDIPEIPESIKFCKALEIADFSGNPLSRL
PDGFTQLRGLAHLALNDVSLQTLPNDIGNLANLVTLELRENLLKSLPTSLSFLVKLEQLD
LGSNELEVLPDTLGALPKLRELWLDRNQLSSLPPELGNLRRLVCLDMSENRLEELPSELS
GLLALTDLLLTQNLLEVVPDSIGSLKQLSILKVDQNRLTHLSDSIGECENLTELVLTENL
LQTLPRSLGKLKKLTNLNADRNRLGGVPDELGGCASLNVLSLRDNRVAKLPAQLADATEL
HVLDVAGNRLQNLPFALANLNLKAMWLAENQSQPMLKFQTEDEESTGEKVLTCYLLPQQP
SSSLENLLQNSVDDSWTDSNLNRVSVIQFQEETTKQEAEDDEAAAERRGLQRRATPHHSE
LKVMKKGIEERRNEAYTSRADGETESPGAEEKRLSDLSNQSHDSAASNSTASANSHEERR
GLMTTDLVGGRGPQEVEVLDEMEVEYIEPTVHFAEEPMYRGGDENGDDDEEGEDGVPHGY
EEEQQRPQFPTEKQRLIRKDTPHYKKHFKITKLPKPEAVAALLQGFSPDAHLAQHPASHH
TAPEEEEEEDEEEEEEGEECMVTPQRHNRIEEPELEDRSLLHANSSLQPVKGVSFDQVNN
LLIEPARIEEEEHNLTILRQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEDGPAARAGV
KVGDKLLEVNGVALQGAEHHTAVEALRSSGTAVSMSVIREHMVEPENAITTTPLRPEDDY
FPRERRASGLPFCMEASSPAGPRHRRSTCLVRNDKGLGFSIAGGKGSTAYRTGDLGIYIS
RIAEGGAAHRDSTLRVGDRVITINGVDMTEARHDQAVALLTGTSPTIALLVERDQAEPGT
AGGSPGLSRARAHSPPPPEPSDSPDQEEGNDDSPHGTHLSRPLQDEYPIEEVMLVKAGGP
LGLSIVGGSDHASHPFGVSEPGVFISKVIPHGLACQSGLRVGDRILEVNTIDLRHATHQE
AVKALLSNKQEIRMLVRRDPSPPGMQEIVIQKQTGEKLGISIRGGAKGHAGNPFDATDEG
IFISKVSSSGAAARDGRLLVGMRILEVSNHSLLGMTHTEAVRVLRAVGDTLFMLVCDGFD
PGNAAAIEASPGIIANPFAAGIVRKNSMESISSIDRDLSPEEMDILQKEVEMARETSQWE
REEVERMRLEREEATRLLEEETENLGTGPLNLDYRTLAALPTTALQKVNRFAPSVCVTAF
MEAPLQTQCSAPLEPLGFGLGQPSTSLYHVDPHALPQSCPTMITESEHLYMSQHSPSPAI
TSFNQEAARQEAPPTGEDEEEEILVDSQPINFSENPFLVANRKGKGRPPSECILSGPPMG
YGSGGKLQPWLFSKAPSTEHPRTDSPIRDAPYSPSTQPPSAHSSTSSLCAGRETRFASIH
FPPTALPAKNNSPLSPYETRPGSIQPLSRGGGRPSTSPGTPDGHSRDGHSSPNPFQHGLS
PINSQTSLQPRAPSPDTIDEFSLNPKQAYKAFAAVPHSLAMLEPPLQDLYGQRNNIHSNL
PSPSLEPELNNEVFEDEVEGDGGLGGGLAAHVSPRPSLTSDRRDYMSLAAVPRLSRASMD
MVVKTPSPGGRDSPEQRSFRDRQKYFEIDMKQQTPDSKPKGRVSLVGADDLKKMREEEER
RFEQRAREYLMDDDDEEEDDLVTQMGVLKATGKVLLDGVEYKVEPVATPPRHYNTPPSYS
ATPPSYCGSSGPSSVDGKGDSQRNSLEESFRLDQQRPNSMTGLIPVYPGESGAPIRTAKA
ERRQQERLRMQSPELAPAGDKDLSPAEKRALEAEKRAMWRAARPYGLEEDVRQYEQDLAK
RLYQSRVRASQGTVPPPQPQNAAASSAASQLRMKSLEQDALKAQMVIAKSREGKKRGTLD
QLAESPSPAPTPSPTPLEDFSPRGVTSPGRLSLSEKKFDYRQFAAIPSSKPVYDIQSPDT
VDDFQFIDDGSSNPVPAEVPTATSTLEEMALYRNKRKLRQGRRSLETAVPT
NT seq
6276 nt
NT seq
+upstream
nt +downstream
nt
atgctgaagtgtatccctttgtggcgctgtaaccgccacgtcgagtcggtggacaagcga
cattgcaatttgcaaaatgtccctgacgagatattccgctacagccgcagtctggaagag
cttctcctcgacgccaaccaactcagagatttacccaagcctttctttagacttctgaac
ctgcggaagctgggcctgagtgacaatgagatccagaggctccctcctgaggtggccaac
ttcatgcagctggtggagctcgacatctccagaaacgacattcctgagatccccgagagc
attaagttctgcaaggcgttggagattgcagacttcagtggaaaccccctctccaggttg
cctgatggtttcactcagctgcgagggctcgcccacctggccctcaacgacgtgtcactg
cagacactgcccaacgacataggaaacctggccaacctggtgacgctggagctcagggag
aacctgctcaagtccctgcccacgtcgctctcttttctggtgaaactggaacagctggac
ctgggcagcaatgaactggaagtgttgccagacacacttggtgctctccctaagctacgg
gagctgtggttggaccgtaaccagctctcctcattgccaccagagctggggaacctgcgg
aggctggtgtgtctagacatgtcagagaaccgcctggaggagttgccctcggagctgagc
ggcctgctggccctcactgacctgctgctcacacaaaacctcctggaggtggtccctgac
agcattggctctctgaagcagctgtccatcttgaaagtggaccagaaccgactgacccac
ctgagcgactccataggggagtgtgagaacctgacggaactcgtgctgaccgagaacctc
ttacagactctgcctcgctcgctgggcaagctgaagaagctgaccaatctgaatgcggac
cgcaaccggctgggcggcgtgcccgatgagctgggcggctgcgccagcctcaacgtgctc
tccctcagggacaaccgtgtggccaagctgcctgcccagctggccgacgccaccgagctc
cacgtgctagacgtggcagggaacaggttacagaacctcccgtttgccctggccaacctc
aacctgaaggccatgtggctggcagagaaccagtcccagcccatgctcaagttccagacg
gaggatgaggagagcaccggggagaaggtgctcacctgctacctgctaccccagcagcct
tcctctagcctggagaacctgctccagaacagtgtggacgacagctggacagacagcaac
ctgaaccgcgtgtctgtcatccagttccaggaggagaccaccaagcaggaggcggaggat
gacgaggcggccgcggagcgcaggggtctccagcggcgggcgacgccacaccacagtgag
ctgaaggtgatgaagaaagggattgaggagaggaggaacgaggcctacacttccagagcg
gatggagagacggagtcccctggtgctgaggagaagcggctgagcgatctgtccaatcag
agccacgactctgcggcgtccaacagtacggcctcggccaactcccacgaagagaggcgg
ggcctgatgaccacagacctggtgggtgggcgtgggccccaggaggtggaggtgctagat
gagatggaggtggagtacatagagcccacggtgcactttgcagaggagcccatgtaccgg
ggtggggatgagaatggggacgacgatgaggagggtgaggatggggtcccacacggctac
gaagaggaacaacagaggccccagttccctacggagaagcagcgtctgatcaggaaggac
acgccgcactacaagaagcacttcaagatcaccaagctgccaaaacccgaggcggtggcc
gcgttactgcagggcttcagccccgacgctcatctggcccaacacccagcctcgcaccac
actgcccccgaggaggaagaggaggaggatgaggaggaagaggaggaaggggaggagtgt
atggtaactccacagcgccacaacaggatagaagagccagagctggaggataggagtctg
cttcatgccaactcctccctgcagccggtcaagggggtgtcatttgatcaagtcaataat
ctgctgattgagcctgctcgaattgaggaggaagagcacaacctgaccattctacggcaa
actgggggtctgggcatcagcatagccggaggaaagggatccacaccctacaagggggat
gatgagggcatcttcatctccagggtgtctgaggacggacctgcagcccgggctggggtc
aaagtgggagacaaacttctcgaggtgaacggcgtggccctccagggtgctgagcaccac
acggcggtggaagccctgcgcagctcgggcaccgccgtctccatgagcgtcatccgggag
cacatggtggagccggagaacgccatcaccaccacgccgctgaggcccgaggacgactac
ttcccccgggagagacgggccagcgggctgcccttctgcatggaggccagctcccccgca
ggcccccgacacaggcggtctacctgcctggtccgcaacgacaagggcctgggcttcagc
atcgccgggggcaagggttccacagcctaccgtacgggggacttggggatctacatctcc
cgaatcgcagagggaggggcggcccaccgagacagcacgctccgcgtcggagacagggtc
atcacgatcaatggtgtagacatgacagaggccaggcatgaccaggcagtagcgctgctt
accggcacctcccccaccatcgccctcctggtggagcgcgaccaggccgagccgggcacc
gcagggggctccccgggcctgtcccgcgcccgcgcccactcccccccgcccccagagccc
tccgactcgcccgatcaggaggagggcaacgatgactcgccccacgggacccacctgagc
cggccgctgcaggacgagtaccccatcgaggaagtgatgttggtgaaggcgggcggccct
ctgggactgagcattgtgggtggcagcgaccatgccagtcatccgttcggcgtcagcgag
cctggtgtcttcatctcgaaggtgatcccgcatggcttggcgtgtcagagtgggctgcgg
gtcggggacaggatactggaggtgaacaccatcgacctgcgccacgccacccaccaggag
gctgttaaagccctgctctccaacaaacaggagatccgcatgctggtgcgcagggacccc
tcaccgccggggatgcaggagatagttatccagaagcagactggagagaagctgggcatc
agcatacgtggcggtgccaaaggccacgctggcaaccctttcgacgccaccgatgagggc
atcttcatatccaaggtgagctccagtggtgcagcggccagagacggccgtctgctggtg
ggcatgcggatcctggaggtgagcaaccacagcctgctgggcatgacccacacggaggcc
gtgcgcgtgctccgcgccgtgggagacaccctgttcatgctggtgtgtgacggcttcgac
ccaggcaacgctgccgccatagaggcgtcgccgggcatcattgccaacccgtttgcggcg
ggcatcgtgcgtaagaacagcatggagagcatctcctctatagaccgagacctgagtccc
gaggagatggacatcctacagaaggaggtggagatggcgcgagagacgtcccagtgggag
agagaagaggtggagcgcatgcgcttggagcgtgaggaggctactcgcctgctagaagag
gagaccgagaacttgggcactggacctctgaatctggactaccggacgctggctgcactg
cccaccaccgctctgcagaaggtcaacaggttcgctccctctgtctgtgtgactgccttc
atggaggcccccctgcagacccaatgttctgcccccttagagcccctgggctttggcctg
gggcagccctccacctccctctaccacgtggacccccatgctctgcctcagtcctgcccc
actatgatcacagagtccgagcacctctacatgtcccagcactctcccagtcccgccatc
acctccttcaatcaagaagcagctagacaggaagccccgcctaccggtgaagatgaagag
gaggagattctggtggactctcagccaattaacttcagcgagaaccccttcctggtggcc
aatcgcaagggaaagggccgccccccctcggagtgtatcctatcagggcctcccatgggc
tacgggagcggtggcaagttgcagccctggttgttcagcaaggcaccctccactgagcac
cccaggacagacagtcccattagagatgccccctactcacctagcacacaaccgcccagt
gctcattcctccaccagttccctgtgtgcaggcagggagacccgcttcgcaagcattcat
ttcccccccactgcactgcctgccaagaataactctccattgagtccctatgagacgagg
ccgggttccatccagccactctcccgtggtggcgggcggccaagcacctcgccaggcact
ccggacgggcacagcagagacgggcacagcagtcccaaccccttccagcatggcctctcc
cccatcaactcccagacctctctgcagcctcgtgccccctcccctgacacaatcgatgag
ttctccctgaaccccaagcaggcatacaaggcgtttgccgccgtgcctcactcgctggcc
atgctggagccgccgctgcaggacctgtatggccagaggaacaacatccactccaacctg
ccttctccttctctagagcctgagctgaacaacgaggtgtttgaggatgaggtagagggg
gacggaggactaggtggaggtctggcagcccacgtctctccccgaccctccctcacctct
gaccgtcgggactatatgagtctggcagcagtgccacgcctctccagagcctcaatggac
atggtcgtaaagactccatctcctgggggcagagacagcccagagcagcgctccttcagg
gacagacagaagtactttgagatcgacatgaagcagcagacgcccgacagcaagcccaaa
ggccgcgtgtccctggtgggagcagatgacctgaagaagatgagggaggaggaagagagg
agattcgagcagcgggcgcgggagtacctgatggatgacgatgatgaggaggaggacgac
ctggtgacgcagatgggagtgttgaaggccacgggcaaggtgttgctggacggggtggag
tacaaggtggagcctgtggcaacgccccccaggcactataacacgccccccagctacagc
gccacgccccctagctactgtggcagctcagggccttcgtcagttgatggtaaaggagac
tcccagaggaattccttagaggagagcttcaggttggatcagcagcggcccaactccatg
actggtctgatcccagtgtaccctggagagtcgggggctcccatccggacggccaaggca
gagcggaggcaacaggagcggctgaggatgcagagtccagagctggccccggccggagac
aaggacctgtcccccgccgagaaacgggctctggaggccgagaagagagccatgtggagg
gcagcaaggccctatggcctagaggaggatgttaggcagtatgagcaggacctggctaag
aggctctaccagtcgcgagtgagggcgtctcagggcaccgtgccgccccctcagccccaa
aacgctgccgcttcctccgctgcctcccagctcaggatgaagtctctggagcaggatgct
ctgaaggctcagatggtcatcgctaagtctcgggagggaaagaagcgtggcacactagac
cagctggccgagtcaccctcgcccgcccccacgccatcccctacccctctggaagatttc
agtcccagaggagtgacgtcaccaggcagactgtccctgtcggaaaagaagtttgactac
cgacagtttgctgccattccttcttccaaacccgtatacgacatccagtcccctgacacg
gtcgacgactttcagttcattgacgacggctccagtaaccctgtgccagctgaggtcccc
actgccacctcaacgctggaggagatggccctctacagaaacaagcgcaagctgaggcag
ggccgccgcagcctggagaccgccgtgcccacataa
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