Oncorhynchus tshawytscha (Chinook salmon): 112227616
Help
Entry
112227616 CDS
T05605
Name
(RefSeq) polypyrimidine tract-binding protein 2
KO
K14948
polypyrimidine tract-binding protein 2
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
otw03041
]
112227616
Spliceosome [BR:
otw03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
112227616
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_5
RRM_1
RRM_8
RRM_occluded
RRM_PARP14_3
GlcNAc-1_reg
Motif
Other DBs
NCBI-GeneID:
112227616
NCBI-ProteinID:
XP_042164396
LinkDB
All DBs
Position
LG29:33121438..33138132
Genome browser
AA seq
548 aa
AA seq
DB search
MCCWQEKYKKKTVVVYNDILAMDGMGDVAVGVKRGSDELMSTSVYNSGSDMSSIGDVTAN
GSDSKSNGSDSKKLRVEDRMEAPPSRVLHIRKLPNETSESEVIALGLPFGKVTNILTLKG
KNQAFLELGTEEAAITMINYYSTVTPHVRNVPVFIQYSNHKELKTDSGNQRAQAVLQAVS
AVQGGGTPASGSIVDLTAASSPVLRIIIDNMFYPVTLDVLQQIFSKFGTVMKIITFTKNN
QFQALLQFNDPPTAQQAKIALDGQNIYNSCCTLRIDYSKLVNLNVKYNNDKSRDYTRPEL
PAGDGQPAMDPNMAAAFQGKDSNSLLGGLSPLNAAAAAAAAAGRVALSGHSGASGVLLAS
NLNEEMVTPQSLFTLFGVYGDAQRVKILYNKKDSALIQMADANQAQLAMSHLNGQKMHGK
PIRVALSKHTSVQLPRDGLDDQGLTKDFTNSPLHRFKKPGSKNFQNIFPPTTTLHLSNIP
TDVSEEDLRLLFSNAGGTVNAFKFFQDHKMALLQMSTVEEAIQGLIDLHNYNMGDNHHLR
VSFSKSTI
NT seq
1647 nt
NT seq
+upstream
nt +downstream
nt
atgtgctgttggcaagagaagtacaaaaaaaaaactgttgtcgtttataacgatattcta
gcaatggacggtatgggagatgttgcagttggtgtgaagagaggatcagatgagctgatg
tcaaccagtgtctacaacagtggatctgacatgagcagtatcggtgatgttacagccaat
gggagcgacagtaaatccaatgggagcgacagtaaaaagctgagagtggaagaccggatg
gaggcccctccctctcgtgtgctgcacatcagaaaactgcccaatgaaacttcagaatcg
gaggtcattgccctggggttacctttcgggaaggtcacaaatatcctgacgcttaagggg
aaaaaccaggctttcttggagctgggcacagaggaagcagcgataaccatgatcaactac
tactctactgtgacaccgcatgttcggaacgtccccgtattcattcagtattccaaccac
aaagaactcaaaacagatagtggaaaccagcgggcccaggcggtcctgcaggcggtgtca
gcggtccaaggaggaggtactcctgcgtctggctccattgtagatctaaccgctgcgtcc
agccctgtgctcagaataatcattgataacatgttctacccagtcactctggatgtgctg
cagcagatcttctcaaagtttggaacagtcatgaagatcatcacattcaccaagaacaac
cagttccaggctctgctgcagttcaatgacccacccactgcccagcaagccaaaatagcc
ctggatggtcagaacatctacaactcgtgctgtacgctccgcatcgactactccaagctg
gtcaacctgaacgtcaagtacaacaacgacaagagccgcgactacacccggccagagctc
cctgcaggggacggacagcctgccatggaccccaacatggctgctgccttccaaggcaag
gactccaactctctgctcggtggcctgagcccgctgaatgctgccgcggcggcggctgct
gctgcagggagggtagctctgtccggtcactctggcgccagtggcgtgctcctggcctcc
aacctcaacgaagagatggttacgccccaaagtctgtttactctcttcggggtgtatggt
gatgcccagagggtgaagatcctctacaataagaaagacagtgctctgatacagatggct
gatgccaaccaagcccagctagctatgagtcacctgaatgggcagaagatgcatgggaaa
ccaatcagggtggctctgtctaagcacacctcggtgcagctgcccagggatggactggat
gaccagggcctcaccaaagacttcactaactcacccctgcaccgcttcaagaagcctggc
tccaagaacttccagaatattttccctcccaccactactcttcacctctccaacatccca
acggacgtttccgaggaagacctccgactgctgttctccaacgccggggggaccgtaaac
gcattcaagttctttcaggatcacaaaatggcgctgctccagatgtcaacggtggaggag
gccatccagggtctgatcgacctccacaactacaacatgggtgacaaccatcacctgaga
gtctccttctccaaatccaccatctaa
DBGET
integrated database retrieval system
