Oncorhynchus tshawytscha (Chinook salmon): 112227699
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Entry
112227699 CDS
T05605
Name
(RefSeq) uncharacterized protein LOC112227699 isoform X3
KO
K05769
Rho guanine nucleotide exchange factor 4/29
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09140 Cellular Processes
09142 Cell motility
04810 Regulation of actin cytoskeleton
112227699
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112227699
Membrane trafficking [BR:
otw04131
]
Others
Rho GTPase associated proteins
Rho guanine nucleotide exchange factors (GEFs)
112227699
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RhoGEF
SH3_1
PH
SH3_9
SH3_2
Motif
Other DBs
NCBI-GeneID:
112227699
NCBI-ProteinID:
XP_024248287
LinkDB
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Position
LG29:23793736..23822435
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AA seq
1314 aa
AA seq
DB search
MRRAGQSDAALSTSDDSLSCRDGSSTDPDLQPRAWPRPLGDLYPTQGHVEIAVPPSLLSG
CGAQVQLVTYDPHNEESRLNGLNTDTWSSRVIGHPEMKPYPSRIMRLFSTQRKCTVPGDS
PGTTRPLSFQGPQSSAGGPQAWPVLSGLAVMGSFKKLRSSVLQGIQNRGTANPDGEYISA
ANQGEYNGMVTTNQSLRLRCGEGYSVSSRVSIGQQMAGMSPYSSENEEEEEVVDKEDGLQ
RNTRFSRSIRRAYGAGRISLLDTGQNGERGEGPGQGVSSNQRPGLGSSSGSAVNLHSEES
VNVLSRLTKSADNLHLKAPFRRKAPSPSPNDSPGTIGSAVANVGPSIQRSASASSVDLRD
RSQSPGRLRSPIGARGHMLKLVGSMTDLTVRRRPNLSPVTCPGSPVTPLSPLSRLHDDYS
RRTPCLPAGDRQRRPSPARTRNVTLVSLEHTPTIHPHLQGRPDHVFSFPTYSEPLATTSS
PLRSSLCEGGRPQEGRGDGWRAQCDSTPLPQGEPCESHSKHHPEVNAEVKTAPKQCIWTR
PDQDQEELEDTSDEQGREALLGGEEVPSPSATGTTLTPRCSLDSPTSPILTTSPMATGAT
ETSTSVTPRRRVGRSRPRPISDYAQLVARKYAIPEEEAELHPEERITNGTLCQDFKSNGG
SQDSDSQENYNMNGDLRCRRRRPMSVIGGVDLYSSPGAEGREDRLPSLLSRPPVPSHQVP
SYRAVSARFRPSTFSQSTPIGLDRLGQRKLHRVLSADGGSECCAAVDGDSVSEEEGSFDE
LSDVTTYLQPGVGLSALSQWISQGQAVYAEALWDHVTMEEQELAFKAGDVIRVLEAPHKD
WWWGMGADREAWFPSSFVRVRVNQEEDSGAESVERCALDQENPHTAPRDTHSAEHRHQMR
TNVVKEIMNTERIYIKHLRDICEGYIRQCGKNPGMFTELQLKTIFSNIEDIYKFQRQFLK
DLERKYNTDQPHLSEIGACFLLQGEGFSIYSEYCNTHPAACGELQRLMKLGRYKHFFEAC
RLLQQMIDISIAGFLLTPVQKICKYPLQLGELLKYTPKDHSDYGGVSDAYEAMKNVASLI
NEGKRRLESVDAIAHWQVAILRWEGADVLERSSELIHSGELTRIVCQGNKTQQRSFFLFD
HQLVFCKKDVLRRDLLYYRGRLDMDHTELLEMPDGRDPELGISLKNALWLRNSSTLETLC
YLCCRKPQDRQRWLQAFARERRRVQEDQETGMKISETQRKQAIFNARKSRQGKIKTMGYS
GNVLPHHQPLHPIHQRHVTVPTSVPQQQVFTLAEPKRKPAHLWYTFTRHTFFRK
NT seq
3945 nt
NT seq
+upstream
nt +downstream
nt
atgagaagggcggggcagagcgatgcagccctgtctaccagcgatgactcactctcctgt
cgcgatggctcctccaccgaccctgaccttcaacctcgagcctggccccgacccctcggc
gatctttaccctacccagggtcacgtggagattgcggtgccaccgtccctgctgtctggg
tgtggtgcccaggtacagcttgtgacctatgacccccacaatgaggagagtagactgaac
gggctcaacacggacacttggtccagccgagtgataggccaccctgagatgaagccctac
ccctccaggatcatgaggctcttctctacccagaggaagtgcaccgttcctggggacagt
ccgggcacaaccaggcccctctccttccagggccctcaatccagtgccgggggcccgcag
gcttggccagtcctgtcagggcttgccgtcatgggctcctttaagaagctgcgctcctca
gtgctccaaggcattcagaaccgagggacagctaatccggatggggagtacatctcagca
gccaaccagggtgaatataatggaatggtcacaaccaatcagagcttaagactgaggtgt
ggggagggctatagtgtgtccagtagggtgtctattggccagcagatggctgggatgagc
ccttatagttctgaaaatgaagaagaggaggaagtagtagataaggaagatggactgcag
agaaacacacgcttttcaaggagtatccggagagcatatggggcggggcgcatctcactg
ctggacactgggcagaacggggaacgcggggagggtccgggacagggggtttcatccaat
cagaggccaggtttaggctccagttcagggtctgcggtgaacctccattcggaagagagc
gtcaacgtgctgagcagactaaccaagagtgcagacaacctacaccttaaggcccctttc
agacgcaaagccccttctccctctccaaatgactcacctggtaccattggctctgcagtg
gccaatgtgggccccagcatacagagatcagccagtgcctcgtccgtggaccttagggac
cgcagccagagccctggtcgccttagaagtcccataggggccaggggccacatgttgaag
ctagtgggcagcatgactgacctgaccgtgagacgtaggcctaacctgtcccccgtcact
tgcccaggctcccccgtgactcccctgtcccccctcagccgtctccacgacgactactcc
cgccgtacgccctgccttcccgccggcgaccgtcaacggcggccctcgcccgccagaacg
aggaacgtcactctggtatcactggaacacaccccaaccatccacccccacctccaggga
agaccagaccatgtcttcagtttcccaacctatagtgaacctctcgctacaacctcatct
cccctgaggagcagcctgtgtgaggggggcaggcctcaggagggacggggagacgggtgg
agagctcagtgtgactccactccactcccccagggggagccatgtgagagccacagcaaa
caccacccggaggtcaatgcagaggtcaagacggcaccaaagcagtgcatatggaccaga
ccagaccaagatcaggaggagctggaggacacatcagacgaacagggcagagaggcactg
ttagggggtgaagaggtgccctctccttcagccaccggtaccactctcaccccaagatgt
tccctagattctcccacctcacccatattaaccacatcacccatggcaacaggcgcaacg
gaaacgtccacgtccgtcacccccaggcggagggtggggcgatcgaggcctcggccaatc
tctgactacgctcagctggttgccaggaagtacgccatccccgaggaggaggcggagcta
catcctgaggagaggattacaaatggaactctctgtcaggacttcaaaagtaatggaggc
tcgcaggacagtgacagccaagagaactacaatatgaatggagatctccggtgccggaga
agacggcctatgtctgtgattggaggagtggatctgtactcttcacctggcgctgagggg
agagaggaccgcctgccgtctctcctgtcacgcccccctgtcccatcccaccaagtgccc
tcctacagggctgtgtcggccaggttccgcccctccaccttctcccagagcacacccatt
ggactggaccgccttggacaacgcaaactacaccgagtcctcagtgcagatggaggctca
gagtgttgtgcagcggtggatggtgacagtgtgagtgaggaggaggggagcttcgatgag
ctcagtgatgtcacaacgtacctgcagcctggggtggggctgtctgctctcagccagtgg
atcagccagggtcaagctgtgtatgcagaggccctgtgggaccatgtgacgatggaggag
caggagctggcgttcaaggcgggggatgtgatccgggtgctggaggcccctcacaaggac
tggtggtggggcatgggggcagacagggaggcctggttcccctccagcttcgtcagggtg
cgtgtgaaccaggaggaggattctggagcggagagtgtagagcgttgtgctctggaccag
gagaacccacacactgccccccgggacacacacagcgctgagcaccgccaccagatgagg
accaacgtggtcaaagagatcatgaacacagaacgcatctacatcaaacacctccgggac
atctgtgagggctatatccgtcagtgtggtaaaaacccaggcatgttcactgagctgcag
ctgaagaccatcttcagtaacatcgaggacatctacaagttccagagacagttcctcaaa
gacctggagaggaagtacaacacagaccagcctcacctcagtgagataggagcctgtttc
ctcttacagggtgagggtttttccatctactctgagtactgtaacacccaccctgcagcg
tgtggggagctgcagcgcctcatgaagctgggcaggtacaagcacttctttgaggcctgc
cggctgctgcagcagatgattgacatctccatcgccggcttcctgctcacacccgtccag
aagatctgcaagtaccccctgcagctgggagagctgctcaaatacactcccaaagaccac
agtgactacggtggagtgagtgatgcgtacgaggcgatgaagaacgtggcgagcctcatc
aatgaggggaagaggcgcctggagagtgttgacgccatcgctcactggcaagtggccatc
ctacgctgggagggagcagacgtgttggagcgcagctcggagctgatccactctggagag
ctgacccggattgtgtgccagggcaacaagacacagcagcgcagcttcttcctgttcgac
caccagctggtgttctgtaagaaggacgtgctgcgccgcgacctgctgtactaccgcggc
cgtctggacatggaccacacggagctgctggagatgcccgacggcagggaccctgagctg
ggcatctcgctgaagaatgccctgtggctccggaacagctccactctggagaccctgtgt
tacctctgctgcagaaagccccaggacagacagcgctggctgcaggcctttgccagggag
agacggagggtacaggaggaccaagagacgggaatgaagatcagtgaaacacagcgaaaa
caagcaatcttcaatgcgaggaaatcccgacaagggaaaattaagaccatgggctactct
ggcaatgtccttccccaccaccagcccctgcatccaattcaccagcgccacgttaccgtg
ccaaccagcgtgcctcagcagcaggtgtttacattggccgagcccaagcgaaagcccgcc
catctgtggtacaccttcacccgacacaccttcttcaggaagtga
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