Oncorhynchus tshawytscha (Chinook salmon): 112227777
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Entry
112227777 CDS
T05605
Name
(RefSeq) lethal(3)malignant brain tumor-like protein 4 isoform X1
KO
K24387
lethal(3)malignant brain tumor-like protein
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
112227777
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
otw03000
]
112227777
03036 Chromosome and associated proteins [BR:
otw03036
]
112227777
Transcription factors [BR:
otw03000
]
Eukaryotic type
Zinc finger
Cys2HisCys zinc factors
112227777
Chromosome and associated proteins [BR:
otw03036
]
Eukaryotic type
Histone modification proteins
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
112227777
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MBT
zf-C2HC
SAM_1
SAM_2
MSL3_chromo-like
SAM_PNT
DUF5431
Motif
Other DBs
NCBI-GeneID:
112227777
NCBI-ProteinID:
XP_024248411
LinkDB
All DBs
Position
LG29:complement(19405619..19556758)
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AA seq
662 aa
AA seq
DB search
MMQAEDRKKRSFSKGVAEEYCLRERPNEDTVKMKNKVTSTQAVRGKKKAWSWDQYLGEKK
VIAAPLRLFTEAQSFPLSRNGFKAGMRLEGIDPLHPSMFCILSVAEVIGYRLRLHIDSYS
ECYDFWVNADSRDIRPAGWCESTGHQLHPPKGYNESEFNWEKYQEACNAEAAPKNLFKSQ
NGTTSTSKFQVGMKLEAVDRKNPCLVCVASVADIVDNHFLVHFDNWDDTYDYWCDASSPH
IHPVGWCQDHGRPLTAPQGHPNPEHFLWEEYLQDNGSTAVPSQAFCMRAPHSFQVNMKLE
AVDRRNPMLVRVATVSDTEDYRVKIHFDGWHEKFDFWVDSDLPDLHPVGWCARTGHPLEP
PLSRAGPSDLKSSVTQGVCPTPGCRGVGHIKGAKYTGHHSAFGCPYSDINMKKEAVLPDR
LGGEKQITFVPVHFVQKTKTLCTANEQEEATPQDTPMETRAMLSGYEEAGRLRGRPPANP
LVKREPREEPATAQGQKLLSLGKRGLPSRLSQSTKYLRVKEEEEEIDLNSMITEHSVDSL
QQALHQSVFLSAMSAHPGRDLPLCWEQHCKLLPGVAGVQASRVAHWTAEEVADFIHSLHG
CDEQAKQFKEEQIDGKAFLLLTQRDIVKIMSVKLGPALKIYNSILMFKHAEDNQSAAGNA
NT
NT seq
1989 nt
NT seq
+upstream
nt +downstream
nt
atgatgcaggcagaggataggaagaaaaggagtttcagcaagggcgtggcggaggaatat
tgtctaagagagcgaccaaacgaggacacagtaaaaatgaagaacaaagtgacaagcaca
caagcagtgaggggtaagaagaaggcatggtcgtgggatcaatacctgggagagaagaag
gtcatagcagctcccctaagactcttcactgaggctcagtcattcccccttagcagaaat
ggtttcaaggcggggatgaggctggaggggatcgaccctctgcacccctctatgttctgc
atcctgtccgtggcagaggtgattggttaccgattacgtctccacattgacagctactca
gaatgctatgacttctgggtaaacgcagactctcgggatatcaggccagccggatggtgc
gagtcgacaggacaccagctccacccaccaaaaggctacaatgaaagcgagtttaactgg
gagaaatatcaagaggcttgcaatgctgaagctgcaccaaagaatctgtttaaatcccaa
aatggtactacgagcacctctaagtttcaggtgggcatgaaactggaggcagtggacaga
aagaatccatgtctggtgtgtgtggcctcggtggccgacatcgtggacaatcacttcctg
gttcactttgacaactgggacgacacctacgactactggtgtgacgccagcagccctcac
atccacccagtgggctggtgccaggaccacggaagacctctcactgcacctcagggacac
cccaatccagaacatttcctgtgggaggagtacttacaagacaacggttccacggcggtt
ccaagccaggctttctgtatgagagcgcctcacagtttccaggtgaacatgaagctggag
gcggtggacaggaggaaccccatgctggtccgcgtggccaccgtctcagacactgaggac
tacagggtcaagatccattttgacggctggcatgagaagtttgacttctgggtggactct
gacctgccggaccttcaccctgtgggctggtgtgcccggacaggtcatcccctggaaccc
cccctctcacgcgcaggaccttctgaccttaagagctccgtgacccagggagtgtgcccc
actccgggctgcaggggtgtgggccacatcaaaggagccaaatacacaggacaccacagt
gccttcggctgtccctactccgacatcaacatgaagaaggaggccgtgctgcctgaccgg
ctgggcggcgaaaagcagatcacctttgtccctgtgcactttgtccagaagaccaagacg
ctgtgcactgccaacgaacaggaggaagccacgccccaggacactcccatggaaaccagg
gctatgttgtcagggtatgaggaggctggtcgtctgagaggacgacccccagccaacccc
ctggtgaagagagagccaagggaggaaccagccacagctcagggacagaagctcctctct
ctggggaagagaggcctacccagcaggctctcccagtcaacaaaatatctgcgagtcaaa
gaggaggaggaagagattgacttgaatagcatgatcacagagcacagcgtggacagcctg
cagcaggccctccaccagtcagtgttcctgtcggcaatgtcggcccaccctggccgggac
ctgcccctatgctgggagcagcactgcaagctgctgcctggagtggccggagtacaggcc
agccgtgtggcccactggaccgcggaggaggtggctgacttcatccactctcttcatggc
tgtgatgaacaagccaagcagttcaaagaggagcaaattgacgggaaagccttcttgctg
ctgacccagcgcgacatcgtcaagatcatgagcgtgaaactcggtcctgccctcaagata
tacaactccatcctgatgttcaagcacgctgaggacaaccaatcggcagctggcaacgcc
aacacatga
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