Oncorhynchus tshawytscha (Chinook salmon): 112227943
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Entry
112227943 CDS
T05605
Name
(RefSeq) t-SNARE domain-containing protein 1 isoform X1
KO
K13814
t-SNARE domain-containing protein 1
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112227943
Membrane trafficking [BR:
otw04131
]
SNARE
Syntaxin (Qa)
Stx-Endo
112227943
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Syntaxin_2
SNARE
Syntaxin
Synaptobrevin
MCPsignal
Laminin_II
PAS_7
Peptidase_M57
Tlp
COG6_N
Prominin
DUF6399
REV1_C
CSN7a_helixI
DUF2383
Carbpep_Y_N
PFam54_60
Sec10_N
Motif
Other DBs
NCBI-GeneID:
112227943
NCBI-ProteinID:
XP_042165789
LinkDB
All DBs
Position
LG03:12079674..12201272
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AA seq
292 aa
AA seq
DB search
MSYGSIDGGSFGGSRNPFGGPKRQGYQPVATQVSSSELQDVFQETSSNIFQINANVVTLE
KSLQSLGTSRDTAELRQSLHSTQQQTNNVITSTSQLIKQLSDIITGSTRQDHLHLTRLKT
GLSESVQRYGDLQKKIADRSRALLPPAQTEMKQSPQTPFAELCEEGGPLFVSAAESSGGD
GQEQAFLSEISEEDVEALRQREEALLQIERDMLDVSQIIRDLASMVHEQGDAIDSIEDYI
QTTTSNVESANQELAKASHHQRQIRKRKCYMLLAGGFILTLLIIIIAVSARK
NT seq
879 nt
NT seq
+upstream
nt +downstream
nt
atgtcttacggatccattgatggaggctcctttggaggcagccgaaaccccttcggaggc
cccaagaggcagggctaccaaccagtagcaacacaggtcagctcctccgagctgcaagac
gtgtttcaagagacctcctccaacattttccagatcaatgcaaatgttgtaacattagag
aagagtcttcaatcgttaggaacgtccagagacactgctgaactgcgacagagcctacat
tctacacagcagcaaaccaacaatgtcatcaccagcaccagtcaactcatcaaacaactc
tctgacatcatcactggctctacacggcaagatcatcttcatctgactagactgaagaca
ggactctcagagtcggttcaacgctatggagatctgcaaaagaaaattgcagaccgttcg
agggccttgctacccccggcacagacagaaatgaagcagagtccccagactccgtttgca
gagctgtgtgaagaggggggtcccctgtttgtcagtgcagcagagagctccgggggggat
ggacaggagcaagcattcctctcagagatcagtgaggaagatgtggaggcccttcgccag
agagaagaggccctactgcagattgagagggacatgttggatgtcagccaaatcatacga
gatctggccagtatggtgcacgagcagggagatgccatagatagcattgaggactacatt
cagaccaccacatccaacgtggagtcagccaatcaggagctagcaaaggccagccatcac
cagaggcagattaggaagaggaagtgttacatgctgctggcgggaggcttcatcctcacc
ctcctcatcatcatcatcgctgtgtcagcaagaaaatga
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