Oncorhynchus tshawytscha (Chinook salmon): 112227973
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Entry
112227973 CDS
T05605
Name
(RefSeq) collectin-12 isoform X1
KO
K10062
collectin sub-family member 12
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04145
Phagosome
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
112227973
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112227973
09183 Protein families: signaling and cellular processes
04091 Lectins [BR:
otw04091
]
112227973
Membrane trafficking [BR:
otw04131
]
Endocytosis
Phagocytosis
Opsonins
112227973
Lectins [BR:
otw04091
]
C-Type lectins
Group 2: Type II membrane receptors (Asialoglycprotien and DC receptors)
Scavenger receptor with a CTLD (SRCL)
112227973
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Lectin_C
Crescentin
Filament
AAA_13
UL45
Chordopox_A33R
Fib_alpha
Lipase_2
Laminin_II
Ly49
Alpha-2-MRAP_C
CCDC93_CC
Motif
Other DBs
NCBI-GeneID:
112227973
NCBI-ProteinID:
XP_024248795
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All DBs
Position
LG29:complement(10235984..10298945)
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AA seq
765 aa
AA seq
DB search
MPTDDFADEEEVQSFGYKRFGIQEGTQCTKCKNEWALKTSIALLYVLCTLLTIAVAVLGY
KVVQKVDNVSEGIESYGGKIIAVETDLKKLDDQTGEKSENTTTEIQAFKNNIRALQRQLS
EVAERSSSNRAALGRLQDSGLDMQGSQGSIQGLLDANTATLRSVNGTLRAYGGTMEGLQE
DTARLQTELQEQVRQQSQALLSIGNLNLTQAQQRGLISALQRSVDDTSQAIQKIRNDFQS
LEQTARQTKSDADWLKEKVQNLQVLASNASALAKSNNDSLEDVGSQLASLSGQLQNTSSL
AENHDQTLREIMDQQRDHDNLTSSKFDQLEIRLDESEGSIDRVTGNISFTTQLLGAINLN
LNELRTCAETVGRHSDYLSDLNATVSDVRSDATTLRSQQDDLVARLDKEVTSLSIIMEEM
KLVDSKHSQLITNFTILQGPPGPRGPRGDKGPQGGAGQPGQKGEKGDTGGPGVQGLRGEK
GFPGPPGIQGFKGQPGSRGNPGSKGSRGSGGRAGPPGANGEPGTAGLPGRDGQAGPQGPQ
GPSGDRGQVGPAGAQGPRGPVGPMGAPGPPGLPGLTARSAAAAAVPLVPFSMQSEAPAPT
VSAPGCPQEWVGFRDKCYHFSKELHNFDDAKKSCDAQTASMVIINDNDEQKWLQKQTSGK
GYFWMGLTDREEENAWRWLDGTEPAFSQWKPGQPDNWSHGHERGEDCAGLIHEGLWNDFF
CEDLISYICEKAMEYPKNSRIIAPSVEGEETEEAWLSQRRYDEHH
NT seq
2298 nt
NT seq
+upstream
nt +downstream
nt
atgcccacagacgattttgcagacgaggaggaagtacagtcttttggatacaagaggttc
gggatccaggaggggacccagtgcactaagtgtaagaatgagtgggcgttaaagacctcc
atagcactactctacgtgctgtgcactctactcaccatcgctgtggctgtcctcgggtat
aaagtggtgcaaaaggttgacaatgtgtccgaaggtatcgagagctatggggggaagatc
attgctgtggaaacagacttgaaaaagctagatgaccagactggggagaagtcggagaac
actaccacagagatccaggcctttaagaacaacatccgggctctgcagcggcagctgtct
gaggtggcagagaggagcagcagtaaccgggcggccctgggtcgtctgcaggattctggc
ctggacatgcagggcagccagggctccatacagggtctgctggatgccaacacggccacg
ctgaggtcggtcaatggcaccctgcgggcctacggtggcaccatggagggtcttcaggag
gacacggctcggctgcaaacggagctccaggagcaggttcggcagcagagccaggccctg
ctgagcatcgggaatcttaacctcacccaggcccaacagaggggcctgatctcggctttg
cagagatctgtggacgacaccagccaggccatccagaagatccgaaacgacttccagagc
ctggagcagacggccaggcagacgaagtcggacgctgattggctgaaggagaaggtgcag
aacctccaggtgctggcctccaacgcctctgccctggccaagtccaacaacgacagcctg
gaggacgtgggatctcagctggcctcgctgtctggacagctccagaacacctccagcctg
gcagagaaccacgaccagactcttagggagatcatggaccagcagcgcgaccacgacaac
ctcacctcctctaagtttgaccagctggagatacgcctggacgagtcagaggggagcatc
gaccgtgtgacaggcaacatcagctttactacccaactcctgggcgccatcaacctgaac
ctcaacgagctgcgcacctgcgctgagacagtggggcgccactccgactacctgtccgac
ttgaatgccactgtgtcggacgtgaggtcggacgccaccacactgaggtcgcagcaggac
gacctggtggcccgcctggacaaggaggtcaccagcctctccatcatcatggaggagatg
aagctggtagacagcaaacactcacagctcatcaccaacttcaccatcctacagggtcca
cctggtccaagaggcccgcggggagacaaaggaccccagggaggagccggtcagcccggt
cagaaaggggagaaaggggatacgggtgggcctggggtgcaggggctccgtggagagaag
ggatttccaggaccaccaggaatacaagggttcaaaggtcagccaggctcacgggggaac
ccaggttcaaagggctcccgagggtcagggggcagggcaggacccccgggggcgaatggt
gagccaggcactgctgggctccctggcagagatggacaggccggtcctcaggggccacaa
ggtccgtcgggagaccgaggacaggtggggccggctggggcacagggacccaggggacca
gtggggcccatgggggccccagggccacctggactgccaggactcactgcccgatctgca
gcagcagcagcggtgcctttggtccctttctcgatgcagagtgaggcccccgctcctact
gtgtcggccccaggttgtcctcaagagtgggttggcttcagagacaaatgctatcacttc
tccaaagagctgcacaactttgacgatgcaaagaaaagctgtgatgcccagactgcgtca
atggtgatcattaacgataacgatgaacagaaatggctgcaaaagcagacctctggaaag
ggctacttctggatgggtctgacagacagggaggaggagaatgcatggcgctggctggat
ggaaccgaacctgccttctcgcagtggaagccaggacagccagacaactggagccacggg
cacgagagaggagaggactgcgctggccttatccacgagggactgtggaatgatttcttc
tgtgaagatctcatcagctacatctgcgagaaagccatggagtatcccaaaaactccagg
attatagcaccctctgtggaaggagaagaaacagaggaggcatggttgagtcagaggcgg
tatgatgagcatcattag
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