Oncorhynchus tshawytscha (Chinook salmon): 112228030
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Entry
112228030 CDS
T05605
Name
(RefSeq) cadherin-10
KO
K06802
cadherin 10, type 2, T2-cadherin
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
otw04515
]
112228030
Cell adhesion molecules [BR:
otw04515
]
Cadherins
Major cadherins
112228030
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
CADH_Y-type_LIR
Cadherin_3
Cadherin_4
Big_9
Podoplanin
DUF2244
TM_ErbB1
Motif
Other DBs
NCBI-GeneID:
112228030
NCBI-ProteinID:
XP_024248918
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All DBs
Position
LG29:complement(4643319..4694487)
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AA seq
785 aa
AA seq
DB search
MITNHFLGLLMLSILQPINALPVAPGNTVNLLGTSQEKDDGRILQRSKRGWMWNQFFLLE
EYTGNDNQYVGKLHSNMDRGDGNVKYILTGEGVGSLFLIDENSGDIHATKRLDREERAIY
TLHATVVDKRTNETLEADTEFNIKIHDINDNEPKFSKDLYFASVPEMSDVGTSVIQVTAT
DADDQTYGNSAKLVYSILQGQPYFSVDSDNGTIRTALPNMDRETKENYQVVIQAKDMAGQ
MGGLSGTTTVSITLSDENDSPPRFANHTFRLSTLESAEVGAAIGRIKANDADVGRNAEMQ
YSIVDRDGQDMFTIISDQNTQEGVIRVKKQLDYEKQRTYSFKVEVTNTYLDPRFMYSPNP
PFKDDAMVRVTIEDVDEPPVFSRNPYIIEVHEDTAAGSFVGVVSARDPDADNNSVKYSID
RHTDLERLFNIDSVNGTITTLKGLDREMSKWHNISVVATEISNPRQTTRVPVFIKVLDVN
DNAPEFAMYYETFVCENVQSGQLIQTISAVDTDEPLVGHKFVFSISSSNPNFTIVDNEDN
TARILTRRAGFSRREMNTYLLPVVISDNDYPIQSSTSTLTVNVCACDSRGNMQSCNTEAL
LSAGLSTGALVAILLCVIILLMIVVLFAALRRQQRKKEPLIISKEDVRDNVVSYNDEGGG
EEDTQAFDIGTLRNPEVMDANKLRRDIIPEMLFPFQRTSPIKDNADVREFIHGRLHENDS
DPTAPPYDSLATYAYEGSGSLAESLSSLESGCVEGDQEYDYLSNWGPPFKKLADMYIGKD
TARET
NT seq
2358 nt
NT seq
+upstream
nt +downstream
nt
atgataaccaatcacttcctgggtctactgatgctctccatcctgcagccaatcaatgcc
ctgcctgtggcacctggaaatactgtgaatctcttgggaacatcgcaggagaaggatgat
ggacggatactccagcgctccaaacgaggatggatgtggaatcaattctttcttctggag
gagtacacagggaatgacaaccagtatgttggcaagctgcactcgaatatggacagaggc
gatggtaacgtgaagtacattctcactggagaaggggtgggaagcttgtttttaatagac
gagaactcaggtgacattcacgccactaagaggttggacagggaggagagggccatatac
acactccacgctacggtggtggacaagaggaccaatgagacactggaggctgatactgaa
tttaacatcaagatccacgacatcaacgacaatgagccaaagttctctaaagacctttat
ttcgccagtgtcccagagatgtctgacgtaggcacatcagttattcaagtcaccgcgaca
gatgctgatgatcaaacatatgggaacagtgccaagcttgtgtacagtattctacagggt
caaccatatttctcagtggattcagacaatggcacgattagaacagccctgcctaacatg
gacagggagaccaaggagaactaccaggttgtgatccaggctaaagacatggctggccag
atgggtgggttatcagggaccaccacagtcagcattaccctctctgatgagaatgacagc
ccaccgcgctttgctaaccatacgtttcgtctgagcactctggagtcggctgaagtagga
gcagccataggtcggatcaaggctaacgatgcggacgtggggcggaatgctgagatgcag
tatagcatcgtcgaccgagacggacaggatatgttcacgatcatctctgaccaaaacaca
caggagggcgttatcagggtaaaaaagcaactggattatgagaaacaaaggacgtactca
ttcaaagtggaggtgactaacacctatctggaccccaggttcatgtacagtccaaaccct
cctttcaaagatgatgccatggtgagggtgacgatagaggatgtggatgagccgccagtg
tttagcaggaacccttatatcattgaggtacacgaggacacagccgctggcagctttgtt
ggtgtggtgtctgccagggaccccgatgctgacaacaactcagtcaaatactccattgac
cgccataccgatttggagagactgttcaacattgattctgttaacggcaccattacaaca
ctgaaaggcctcgacagggagatgtcaaaatggcataacatctctgttgttgcaactgaa
ataagtaaccctcgccaaaccactcgagtcccagtgttcatcaaggtcctggacgttaac
gacaatgcacctgaatttgccatgtattacgagacatttgtctgtgaaaatgtccaatca
ggacagctgattcagacgataagtgcggttgacacagatgagccccttgttggacataag
tttgtcttcagcataagctcctccaatccaaacttcactatcgttgacaatgaagataac
acagccaggatcctgactcggagggcaggattcagccggcgtgagatgaatacctaccta
ctgcccgtggtgatctcggacaatgactaccctatccagagcagcaccagcactttgact
gtgaatgtgtgtgcctgcgacagccgggggaacatgcagtcctgcaacactgaggctctg
ctgtctgccgggctgagcactggagccctggtggctatcctgctctgtgtcattatcctc
ttgatgattgtggtgctgttcgctgccctgaggaggcagcagaggaagaaggagcctctg
atcatctccaaagaggatgtgagagacaacgtcgtcagctacaacgatgaagggggcgga
gaggaggacacccaggcctttgatattggcacgctgcgcaacccagaggtgatggacgct
aacaagctgcgcagggatatcatcccagagatgctatttcccttccagaggacatctcct
ataaaggataacgccgacgtcagagaattcattcatgggaggcttcatgagaacgactcg
gaccccaccgcgccgccctacgactccctggccacctacgcctatgaggggagcggctcg
ctagccgagtccctcagctccctggagtcaggatgtgtggagggggaccaggagtacgat
tacctcagcaactggggacccccgttcaaaaaactagcagatatgtatatagggaaggac
acggcgagagaaacttag
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