Oncorhynchus tshawytscha (Chinook salmon): 112228202
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Entry
112228202 CDS
T05605
Name
(RefSeq) lymphoid enhancer-binding factor 1-like isoform X1
KO
K02620
transcription factor 7
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04310
Wnt signaling pathway
otw04520
Adherens junction
otw04916
Melanogenesis
otw05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
112228202
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
112228202
09150 Organismal Systems
09152 Endocrine system
04916 Melanogenesis
112228202
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
112228202
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
otw03000
]
112228202
Transcription factors [BR:
otw03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG TCF-1
112228202
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CTNNB1_binding
HMG_box
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
112228202
NCBI-ProteinID:
XP_024249076
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All DBs
Position
LG30:complement(37486972..37573097)
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AA seq
476 aa
AA seq
DB search
MPQLSSGGGDDQGANDEMISFKDEGEQDEKIQENAFTERDLADLKSSLVNESETNQSSNA
AAVRRSQQNEHRGYQEKHREHLDSVSKHQDGGMYKTAYPGYPFLMLPDPYIPNGSMSPSS
NKVSVVQQSHGMHPLTSLLPYSNDHFNPSPPHLPTDMSQKGVHRPQSQDISGFYSLPPGG
VGQMPPSMGWQSQPVYPLSSCGFRQPYSSSLPNSSSYPRFSHSLMLGPGMHPTGIPHPAI
MPPSGKLDHHDHYDRNMYAKPHQEPKREKEPKKPVIKKPLNAFMLYMKEMRAKVIAECTL
KESAAINQILGRRWHALTREEQAKYYELARKERQLHMQLYPSWSARDNYDAGLRGCAGEK
SKADWGKKKRRKREKQQDSSADPGSPKKCRARFGLNQQTDWCGPCRRKKKCIRYLQGGWC
TSPTSSDGSAIDSPLSPVDGPLSLLPPCITPCTSCPANTHLLSSQNPQPQNCLSKL
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
atgcctcagctcagtagtggcggaggagatgatcaaggagcaaacgatgaaatgatatcc
ttcaaggatgaaggcgaacaagatgagaaaattcaagaaaacgctttcacagaaagggac
ttagctgacctcaagtcgtctctggtgaatgaatcggagacaaatcaaagttcgaacgca
gcggcggtcagacgaagtcagcaaaacgaacatagaggttatcaagagaaacaccgggag
catctcgacagcgtgtccaaacatcaagatggagggatgtataaaacagcgtatccagga
tacccgtttctcatgctgcctgacccatacattcccaacggatccatgtccccatcttcc
aacaaagtttcagtggtccaacagtctcacgggatgcaccccctgacgtccctgctgccc
tacagcaacgaccacttcaaccccagcccccctcacctgcccacagacatgagtcagaaa
ggcgttcacaggccccagtcccaggacatctcaggtttctactccctaccccctggcggt
gtaggacagatgcccccctccatgggctggcaaagtcagcctgtctatcccctgtcctca
tgtggattcagacagccctactcctccagtctccccaacagctcttcctaccccaggttc
tctcactctctgatgctggggccaggcatgcaccccacggggatcccccacccagccatc
atgcccccttcaggcaaactggaccatcatgaccattacgacaggaacatgtacgctaag
cctcaccaggagcccaagcgggagaaggagcccaagaagccggtgatcaagaagcctctg
aatgctttcatgctgtacatgaaggagatgagggccaaggtgatcgctgagtgcacactg
aaggagagcgctgccatcaaccagatactgggccgaaggtggcacgccctgacccgggag
gagcaggccaagtactatgagctggccaggaaggagcggcagctacacatgcaactctac
cccagctggtccgccagagacaactacgatgcaggccttagagggtgcgcgggggaaaag
agtaaagctgattggggcaagaagaagagaagaaaaagagagaagcagcaggactcctca
gcagaccctggctctcctaagaaatgcagagctcgcttcggcctcaaccaacaaacggac
tggtgcggtccctgcaggaggaaaaagaagtgcattcgataccttcaaggaggatggtgc
accagccccacttcttccgatggaagcgctatagactcgcccctctcccccgttgacggc
cccctcagcctgcttcccccttgcataaccccctgcacctcctgcccagcaaacacacac
ctcttatcctctcaaaatccacaaccacagaactgtctttcaaagctttaa
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