Oncorhynchus tshawytscha (Chinook salmon): 112228252
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Entry
112228252 CDS
T05605
Name
(RefSeq) long-chain-fatty-acid--CoA ligase 6 isoform X1
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw00061
Fatty acid biosynthesis
otw00071
Fatty acid degradation
otw01100
Metabolic pathways
otw01212
Fatty acid metabolism
otw03320
PPAR signaling pathway
otw04146
Peroxisome
otw04216
Ferroptosis
otw04920
Adipocytokine signaling pathway
Module
otw_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
112228252
00071 Fatty acid degradation
112228252
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
112228252
09143 Cell growth and death
04216 Ferroptosis
112228252
09150 Organismal Systems
09152 Endocrine system
04920 Adipocytokine signaling pathway
112228252
03320 PPAR signaling pathway
112228252
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
otw01004
]
112228252
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
otw04147
]
112228252
Enzymes [BR:
otw01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
112228252
Lipid biosynthesis proteins [BR:
otw01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
112228252
Exosome [BR:
otw04147
]
Exosomal proteins
Exosomal proteins of breast milk
112228252
Exosomal proteins of breast cancer cells
112228252
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C
Motif
Other DBs
NCBI-GeneID:
112228252
NCBI-ProteinID:
XP_024249183
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All DBs
Position
LG30:complement(38478773..38578961)
Genome browser
AA seq
723 aa
AA seq
DB search
MLAFVLISGSIWIILELSSTLMERMQTQELQSSLQLPELDELNQFFRSLPISTLVGIGAL
TAVLAYWLATRPRAISPPCNLQHQSEEVAHEDGVRRSMLGDSPNNLLTHYHEDAKTMYEV
FQRGLHIAGDGPCLGSRLPEKPYKWLSYKEVTTRAEYLGSGLLSQGCTPCPDQFIGVFAQ
NRPEWIISELACYTYSMVVVPLYDTLGPDAICYIINTADIVTVICDKPEKAQVLLGNVER
QETPGLKRIILMDPFDPALLEEGAGCGVIVQSMQDVEDLGRENHRKPLPPTPEDLSIVCF
TSGTTGNPKGVMLTHGNVVADFSGFLKVTDKVIFPNQDDVLISFLPLAHMFERLIQSVVY
CHGGRIGFFQGDIRLLSDDMKALRPTIFPVVPRLLNRMYDKIFSQANTPLKRWLLNFAAK
RKGAEVSRGIIRMDSLWDKIFFSKIQASLGGRLRMIVTGAAPASPTVLGFLRAALGCQVY
EAYGQTECTAGCTFTTPGDWTSGHVGAPLPCNLIKLVDVAEKNYFARKGEGEVCVKGPNV
FKGYLKDPERTAETLDTDGWLHTGDIGRWLPNGTLKIIDRKKHIFKLAQGEYISPEKIEN
IYIRCEPVTQLYVHGDSLQSCLVAIVVPDPETMPAWALKKGMEGSYRDLCKNTVLKKAIM
EDLQRLGKASGLHSFEQVKNIHIHNEQFSIQNGLLTPTLKAKRPELREFFKEKIEDLYEN
ISM
NT seq
2172 nt
NT seq
+upstream
nt +downstream
nt
atgcttgccttcgttctgatctctgggtctatctggattatattagagctgagttccacc
ctgatggagaggatgcagacccaggagctgcagagcagtctacagctgccagagctggat
gagttaaaccagttcttccgctccctgcccatctccacactggtgggcatcggtgccctg
accgccgtgctggcctactggcttgccacacggccacgtgccatctctcctccctgcaat
ctccaacaccagtctgaagaagtggcgcatgaagatggggttcgcaggtccatgctgggg
gacagccccaataatctgctgacacactaccacgaggatgccaaaaccatgtatgaggtg
ttccagagaggcctccacatagccggtgatggaccttgcttaggctcccggctacccgaa
aagccttacaagtggctgtcctataaagaggtcacaacccgggcggagtacttggggtcg
gggctgctgagccagggctgcacgccgtgcccagatcagttcatcggagtgtttgcacag
aacaggccagagtggatcatttcggagctggcctgttacacctactctatggtggtggtg
cctctgtatgacactctagggcctgatgccatatgctacatcatcaacactgcggacatc
gtcacagtaatctgtgacaagcctgagaaggcccaggtgcttttgggtaacgtggagagg
caggagacccctgggctgaagagaatcatcctgatggacccctttgatcctgccctgctg
gaggagggggcgggctgcggggtcatcgtccagtccatgcaagatgtggaggatctgggc
agagagaaccacagaaagcccctgccacctacaccagaagatctgtccatcgtgtgcttc
accagtggtaccacaggaaacccaaagggagtcatgctgacacacgggaatgttgtggct
gatttctcaggcttcctcaaagtgacagataaagtaatattcccaaaccaagacgacgtt
cttatctccttcctgcctctggcgcacatgtttgaaagactcatccagtctgtggtgtat
tgtcacggtggccggatcggtttcttccaaggcgacatccgcctgttgtctgatgacatg
aaggccttaaggcccaccatcttccctgtggtacctcgactgctcaatcgcatgtacgac
aagatattcagccaggccaacaccccattgaagcgttggctgctgaactttgcagctaag
agaaaaggggcagaggtcagcagggggatcatccgcatggacagcctgtgggataagata
ttcttcagtaagatacaggccagcctgggtgggaggttacgcatgattgtaactggagct
gcgccggcctcccccactgtactggggtttctcagggctgcactgggttgtcaggtgtat
gaggcgtatggccagacagagtgtactgctggttgtactttcaccactcctggagactgg
acctcaggtcatgtgggggcaccattgccatgtaacctcatcaagctggtggatgtggct
gagaagaactactttgcacgcaagggagaaggagaggtgtgtgtgaaaggacccaatgtt
ttcaagggctacctcaaagaccctgagaggactgctgaaaccctggacacagacggttgg
ctccacaccggagacatagggagatggttacctaacggtacactgaagatcattgacagg
aagaagcacatctttaagctggcccagggagagtacatctcccctgagaagatagagaac
atttacatccgctgtgagcctgtgacccagctctacgtccatggtgacagcctacagtcc
tgtctggttgccatagttgttcctgacccagagacaatgcctgcatgggccctgaagaaa
ggcatggaagggagctatcgggacctctgtaaaaatactgtcctgaagaaagccatcatg
gaagacttgcagagactgggcaaggccagtggcctccactcgtttgagcaggtgaaaaac
atccacatccacaacgagcagttctccatacagaatggcctattgactcccacactaaaa
gcgaagagacccgagctgagggagtttttcaaggagaagatcgaagacctgtacgaaaac
atctccatgtga
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