Oncorhynchus tshawytscha (Chinook salmon): 112228327
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Entry
112228327 CDS
T05605
Name
(RefSeq) PDZ and LIM domain protein 4 isoform X1
KO
K23353
PDZ and LIM domain protein 1/2/3/4
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
112228327
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
otw04990
]
112228327
Domain-containing proteins not elsewhere classified [BR:
otw04990
]
LIM domain-containing proteins
PDZ-LIM family proteins
112228327
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Gene cluster
GFIT
Motif
Pfam:
DUF4749
PDZ
LIM
PDZ_6
PDZ_2
BNR_2
SNAPC3
Motif
Other DBs
NCBI-GeneID:
112228327
NCBI-ProteinID:
XP_024249317
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Position
LG30:complement(38692764..38733942)
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AA seq
373 aa
AA seq
DB search
MPQTVTLKGPSPWGFRLVGGRDFSTPLTISRVTPDSKAAQGDLCPGDTILAINGDSTETM
THMEAQNRIKACMGELTLAVSRCEDKVWSPTVIEDGKTSPFMATLESESPQNFRPISTGP
ITGGYISGYSSGHNGSGYSRKPSYISEAPHLNNGTSKQLNNMQYNNPAGLYAHNNGSNGD
RDRVLPKQMGSLSLSSPHSPEPPTHSPLGRNGNGPSFEVTTESDVYKMLQDPEEPASAPK
QSGSFKYLQGILEAEDGGVSPTDRSGVRSLRSPVQSPVPKLGSPIPGPMPGLQKLPQCTR
CGNGIVGTIVKARDKLYHTECFMCDDCGLNLKQRGYFFIEENLYCETHAMARVQPPEGYD
VVAVYPNSKVELV
NT seq
1122 nt
NT seq
+upstream
nt +downstream
nt
atgccccagaccgtgacactgaagggaccctcaccttgggggtttcgactggtcggtgga
agggactttagtactccgttaactatttcgagggtaacaccggacagtaaggcagcacag
ggggacctgtgtcctggggacaccatcctggccatcaatggcgacagcacagagaccatg
acccacatggaggcccagaacaggatcaaggcctgcatgggggagctcacactggccgtc
agcaggtgtgaagacaaagtctggtctccaactgttattgaagatggcaagaccagtcca
ttcatggctacgttggagtctgagtccccacagaatttccgaccaatcagcactggacca
atcaccggtggatacatcagtggctacagtagcggtcacaacggcagtggatacagccga
aaaccctcctacatctccgaggcgccgcacctcaacaacggcacctccaagcagctcaac
aacatgcagtacaacaacccagccggcctgtacgcacacaacaatggcagcaatggagac
cgagacagggtcttgccaaaacaaatgggcagcctgagcctgagctccccacacagccct
gagcctccgacgcattctcctctgggacgtaatgggaacggtcctagttttgaagtcacc
acagagtcagacgtgtataagatgctgcaggacccagaggagccagcctctgcacccaaa
cagtccggctccttcaaatacctacagggcatactggaggcagaggatggaggtgtgtcc
cccactgacaggtctggagtgagaagcctaaggtccccagttcaatccccagtccctaaa
ttgggcagccccattcctggccccatgcctggcctacagaaactcccccagtgcacgcgc
tgtggcaacggcatagtgggcaccatcgtgaaggccagagacaaactgtaccacacagag
tgcttcatgtgtgatgactgcggcctgaacctcaagcagaggggctacttcttcattgag
gagaacctgtactgtgagacccacgccatggcccgtgtccagcctcctgagggatatgac
gtggttgcagtctaccccaattccaaggttgaactggtctga
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