Oncorhynchus tshawytscha (Chinook salmon): 112228354
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Entry
112228354 CDS
T05605
Symbol
lig3
Name
(RefSeq) DNA ligase 3 isoform X1
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
112228354 (lig3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
otw03400
]
112228354 (lig3)
Enzymes [BR:
otw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
112228354 (lig3)
DNA repair and recombination proteins [BR:
otw03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
112228354 (lig3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
LIG3_BRCT
zf-PARP
DNA_ligase_A_C
RNA_ligase
mRNA_cap_enzyme
BRCT_2
Motif
Other DBs
NCBI-GeneID:
112228354
NCBI-ProteinID:
XP_042165048
LinkDB
All DBs
Position
LG30:complement(34123306..34147391)
Genome browser
AA seq
1024 aa
AA seq
DB search
MQRFCISLALKTVDNIHFGKLCRCQPTWKLFVAYPLSANFQILPHCRGILPYPLDCHQCT
QPPWNRSLSLDSNFKVCWRHYCTNQTDMAEQRYCVEYAKRGTAGCKKCKDKIMKGLTRIG
KIVPNPFSESAGEMKEWYHVKCIFEKLERARATTKKIEDITDLEGWEELQDEDKELINKL
VGDLMAKANTSPKKKVQAKLNNSGQLSAPPADPSLNAPRKFSGFTATKAGSSSSPGPSPA
KPNQGSPLSAQLCDPKHKDSLLREFRKLCAMVADKNSYNVKTQIIHDFLKKGSGGDKFKG
DVYLTVKLLLPGVVKSVYNLNDKQIVKLFSRIFNCNQEEMVRDLEQGDVSETVRMFFEEG
KSFPPAAKSLLTIQEVDASLTRLAQLTKEDDQQKELEDISKKCTGNDLKCIIRLIKHDLK
MNSGAKHVLDAVDPNAYDAFKASRNLGDVIERVLRNQQDATNGSGPRKLLTIEASLMTPV
QPMLAEACKSIQYAMKKCPNGMYSEIKYDGERVQVHKNGDHFSYFSRSLKPVLPHKVAHF
KEFIPQAFVGGNSMILDAEVLLIDTNTSKPLPFGTLGVHKKAAFEDAKVCLFVFDCIYFN
GVSLMEKPLYERRKFLHDNMVEVPNRILFSEMKHVTRAADLAEMITRVIREGLEGLVLKD
LKGTYEPGKRHWLKVKKDYLNEGAMADTADLVVLGAFYGKGSNGGIMSSFLMGCYDPNSK
KWCTVTKCSGGYDDAMLTRLQKELDMIKISKEPSKIPGWLKIIKNYYPDFIIRDPEKAPV
WEITGAEFSKSEMHTADGISIRFPRMTRVRDDKDWKSATNLMQLKELFRISKERCDFEVT
AGPSKGGEDDKGSSGDSGSNSPPSTSQRPVTPRKTSTGNSNTPKAKAVKTEPPSPVPATK
RKMPAEEPSAKKVKTETVHHSNGQSKTKMAPSMLAEPRNDKTSCSPQTLLDIFSGVKLVL
PDSVQDHTKLRRYFVAYDGDLVPEYDAASATHTLTEPEEDSHAQRVTPGWIWECIRKRRV
VPPC
NT seq
3075 nt
NT seq
+upstream
nt +downstream
nt
atgcagagattctgtatttcattggcacttaagactgtcgacaatatacattttgggaaa
ctgtgcaggtgtcaacccacctggaaactgtttgtcgcttatcccttatctgcaaacttc
caaattctaccccattgtaggggcatcctcccctatcccttggactgccatcagtgcacc
cagcccccttggaatcgcagtctttcactagattccaatttcaaggtttgctggcgtcac
tattgtactaaccagacagacatggctgaacagagatactgtgtggagtatgccaaacgt
ggcactgcgggatgtaagaagtgtaaggacaaaatcatgaagggcttgacccgcatcggg
aagattgtgcctaacccgttcagtgagtctgccggggagatgaaggagtggtaccatgtg
aagtgtatctttgagaagctggagcgggcccgggccaccactaagaagatcgaggacatc
acagacctggagggctgggaggagctgcaggatgaggacaaggagctcatcaacaaactt
gttggagacttgatggccaaagctaacacgagcccaaagaagaaggtgcaagccaagctg
aacaacagtggtcagctatcagctccgcctgctgacccttctctgaatgcaccacggaag
ttctctggattcacagctactaaggctgggagttcaagcagcccaggcccatccccagcc
aaacccaaccagggcagtcctctttccgcacagctctgtgaccccaaacacaaggatagc
ctgctccgggagttccgcaagctctgtgccatggtggcagacaagaatagctacaatgtc
aagacacagatcattcacgacttcctgaagaaaggctcagggggagataaattcaaggga
gatgtgtacctgacggtgaagctgcttctcccaggggtggtgaagagtgtgtacaacctc
aacgacaaacagatagtcaagctcttcagccgcatattcaactgcaaccaggaggagatg
gtgcgagatctggaacagggggatgtgtcggagacagtgaggatgttttttgaagaaggc
aagtctttcccaccggccgccaagagtctgctcacgattcaggaagtggatgcgtccctt
acccgtctggcccagttaaccaaggaggatgaccagcagaaagagctagaggacatatcc
aaaaaatgtaccggcaatgacctgaaatgtatcatcagactcattaagcatgatctaaag
atgaactctggagctaagcatgtcttggatgcagttgacccgaatgcctacgacgctttc
aaggcctcccgtaacctaggggacgtgatagagcgcgtgctgaggaaccagcaggacgcc
accaacggctcaggccccaggaagctcctcactattgaagcctccctcatgaccccagtg
cagcctatgctggctgaggcatgcaagtccatccagtacgccatgaagaagtgccccaac
ggcatgtactctgaaatcaagtatgacggcgagcgtgtccaggtccacaagaatggagac
cacttcagctacttcagccgcagccttaaacctgtgttgccacacaaggtggcccatttt
aaagagttcatccctcaggcctttgttggtggcaacagcatgatcctggatgccgaggtg
ctcctcatcgacaccaataccagcaagccactacccttcgggacactgggggtgcacaag
aaagcagcctttgaagacgccaaagtgtgcttgtttgtgttcgactgcatctatttcaac
ggcgtgagcctgatggagaagcccctgtacgaacgaaggaagttcctccatgacaacatg
gtggaggttcccaacaggatcctgttctccgagatgaagcacgtcactagggcggctgac
ctggccgagatgatcacacgggtcatcagagagggactggaggggctggtcctcaaagac
ctcaagggcacctatgagccagggaagcgccactggctgaaggtaaaaaaggactacctg
aacgagggagcaatggctgacacagcagacctggtggtgctgggagccttctatggcaaa
ggctcaaacggcgggataatgtccagtttcttaatgggctgctatgacccgaactctaag
aagtggtgcaccgtgaccaagtgctccggaggctacgatgacgccatgttgacccgactc
cagaaggagctggacatgatcaaaatcagcaaggaacccagtaaaatccctggctggttg
aaaatcatcaagaactattaccctgattttattatccgcgatcctgagaaagcgccggtg
tgggagatcacgggggcggagttctccaagtcggagatgcacaccgccgacggcatatcc
atccgcttcccccgcatgacgcgtgtccgtgacgacaaggactggaagagcgccaccaac
ctgatgcagctcaaagagctcttccgcatctccaaggagaggtgtgactttgaagtgaca
gcagggccctccaaaggaggtgaggatgacaagggctcttcaggagacagtgggagcaac
tctccaccctccacctcccagagaccagtcactcccagaaagaccagcacaggcaacagc
aatacccccaaagctaaggcagtaaagacagagcctccctcccctgttccagcaaccaag
aggaaaatgcccgcagaagagcccagcgcaaagaaggtaaagacggaaactgtccatcac
agtaatggacaaagcaagactaaaatggccccctccatgttggcagaacccaggaatgac
aagacttcctgctctccccagactctactggacattttcagtggtgtgaagcttgtcctg
ccagactctgtgcaggaccacaccaagctgcggcgctactttgtggcctacgacggggac
ctggtgccggagtatgacgccgcttcggccacacacaccctgactgagcccgaggaggac
agccatgcccagagggtcacccccggctggatctgggagtgtatccgcaagagacgggtg
gtgcctccctgctga
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