Oncorhynchus tshawytscha (Chinook salmon): 112228368
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Entry
112228368 CDS
T05605
Symbol
arhgef12b
Name
(RefSeq) rho guanine nucleotide exchange factor 12 isoform X1
KO
K07532
Rho guanine nucleotide exchange factor 12
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04270
Vascular smooth muscle contraction
otw04625
C-type lectin receptor signaling pathway
otw04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09140 Cellular Processes
09142 Cell motility
04810 Regulation of actin cytoskeleton
112228368 (arhgef12b)
09150 Organismal Systems
09151 Immune system
04625 C-type lectin receptor signaling pathway
112228368 (arhgef12b)
09153 Circulatory system
04270 Vascular smooth muscle contraction
112228368 (arhgef12b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112228368 (arhgef12b)
Membrane trafficking [BR:
otw04131
]
Others
Rho GTPase associated proteins
Rho guanine nucleotide exchange factors (GEFs)
112228368 (arhgef12b)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RGS-like
PH_16
RhoGEF
PDZ
PDZ_6
PDZ_2
SOS1_NGEF_PH
HR1_TOCA
Pept_S41_N_bact
Motif
Other DBs
NCBI-GeneID:
112228368
NCBI-ProteinID:
XP_024249397
UniProt:
A0A8C8F7K4
LinkDB
All DBs
Position
LG30:33415692..33529531
Genome browser
AA seq
1521 aa
AA seq
DB search
MSGIQSTLPERFSKKATRTPSILSKDHPPDKKPKSDKNTVPPAHEFDPTDVPVQLSGCVV
AEGSPSEPCGLVQRCVIIQKDENGFGLTVSGDNPVFVQLVKEDGAAMRAGVQTGDRIIKV
NGTLVTHSNHVEVVKLIKSGSYVALTVLGRPPGLAQISLSEGEGGDLSSFLSSPHSPGPT
GGTGERCVTSSTSPQDHITSPLPLWEENNALHSQKVDILQKMLTKEQEDLQAMKEVYSRN
PTAKLLKDIQEAKKHIPLLQSQLSKATGTPQDGSLSHQDGEVEEGGIEAADGEQTPSSQG
ESSSDGPWTNNAMSPSPLPENPCQRETPCHSPKTTPRESLNSCPSPDTEDTADLNCNFQS
SMGSPFSRLNPQIIGAEDDYFDTEQEQINGQCSCFQSIELLKSRPAHLAAFLHHVVSQFD
PAPLLCYLYADLYKQTNSKETRRIFMDFHTFFMDRAANLKVAVPESMTSELERRRPELIP
EELHRPYIQLLQDTLLPDIQRNLEDFRQKRSMGLTLAEGELAKLDTERVRDRVSLERERS
CSEHIISKIEEVLLTSQPTEEEKCTTMQYVILTYMKHLGVKVKEPRSLEPKRVRINFLPK
IKKSIKPEKEGEEKVKKPRFPSILGPPRRPSRVDSASISKAMELNKHRGPQKQLSQPALS
VFEQPEFSAGGIRARSQFSDPGSDAATHPLAYIAPPPHSAPASQGSDPTGRDSDSGLTPS
SALPRLSTDGLHSGDTLDGMVHLTSTHFDFSPCTLDQLQEEERESDRAQEGGTPKPAQRM
DGLGCGDVPSEDDQGNEIECEQDPPNWQALVSREVLAGLTPQEIKRQEVINELFYTERAH
LRMLKVLDNVFCQKLTRDSILPPGDIKHIFTNLEEIVQLHVWITEQMTVIRKKNETSVID
LIGDDLLAWFSDDEEEKIKRAVGTFCSNQPFALELIKTRQKKDQRFTSFMQEAESNRLCR
RLQLKDIIPVEMQRLTKYPLLLESIAKYTEDAEERDKVKRAGECCRTILNYVNQTVKEAE
NKQRLEDYQRRLDLSSLKQSENPMISEFKSLDLTKKKMVHEGPLSWKVNKDKTIELYTLL
LEDILVLLQKQDERLVLKCHSKNLAGTADTKHIFSPIINLNTVLVRSVATDNKSFFVLSM
SDNGAQIYELMAQTVSEQRTWQCLITQSAETMKTKTHIIPLPQTDVERDAVEIISTGVPK
LNKDPELTSMGGTQSPEKDVSSLPGLQPTPTSTNPFDGVKSDDEEEEDSPLPDRREEQEE
EEEVEEVDEEEVEAFLDGELADRLPFLQERSRLGIAIDDEDPDDAFGMPPSRAEEALRTL
AALRQVLLNHMTNRAEGSDKDKEKGKEKEQRKGRAPGGRLLRTTSLRGPEDNNSISAPSS
VAAPSTGSSENGALEKTEAGREEEAPGSNELPSGDTGFFETSEEYGSYMVLEGYGASGES
STDNDGQASGGGGPDIDLKKLLSSSSQTGGAGPKLRRQVMTHIRLLQANLQHLKEVETKY
NELRQRLTETATDTEENKDNS
NT seq
4566 nt
NT seq
+upstream
nt +downstream
nt
atgagcggcatacagtcaacactccctgaaaggttttccaaaaaagcaaccaggacccct
agcattctcagcaaggaccaccccccagacaagaaacccaagagtgacaaaaacacagtc
ccacctgcgcatgagtttgaccctacagacgtgcctgtgcagctgtctggctgtgtagta
gccgagggaagcccctccgaaccctgtgggcttgtccagcgttgtgtgatcatccagaaa
gatgagaacggctttgggttgacggtgagcggagacaaccctgtatttgtgcagttggtc
aaagaggatggcgctgccatgcgagcgggtgtccagacgggtgataggatcatcaaggtt
aacgggaccttagtaacacattcaaaccatgtagaagtcgtcaagctaataaaatcgggc
tcctatgtggccctcacagtgctggggaggcccccggggctggcccaaatctcgctgtcg
gagggcgaggggggagacctgtcctctttcctctcctcgccccactctcctggaccaacg
gggggaacaggggagcgctgcgtcacctcatccaccagcccccaggaccacatcacctcc
ccgctgcccctctgggaggagaataacgcacttcacagccagaaggtggacatcttacag
aagatgctgaccaaggagcaggaggatttacaggctatgaaggaagtgtacagcaggaac
cccacagcgaaactactgaaggacatccaggaggccaagaaacacattcctctgctgcag
agccagctcagcaaagccacaggcacacctcaggatggctccctctcccaccaggacggt
gaggtagaggaggggggcattgaggcagccgatggagagcagaccccctcctcgcaggga
gaaagcagcagcgacgggccctggaccaataacgctatgtctcccagtcccctccctgag
aatccgtgccaaagagagacgccctgccacagcccaaagaccaccccccgagagagcctc
aactcctgcccctcgcctgacacagaggacacggcggacctgaactgtaacttccagtcc
agtatgggcagccccttctcccgtctcaacccccagataatcggagcagaggacgactac
tttgacacagagcaggaacagatcaacggtcagtgtagttgttttcagagtatagagctg
ctcaagtctcggcccgctcacttggccgccttcctccatcacgtggtctctcagtttgac
cctgcacctctgctatgctacctttatgctgacctgtacaagcagaccaactccaaagag
accagacggatcttcatggatttccatactttctttatggaccgagcagcgaatctgaaa
gtagctgtgcctgagtctatgacctctgaactagagcggcggagacctgagctgatccca
gaggaactgcacagaccttacatacagctgttacaggacacactgctaccagacatccag
aggaacctagaagacttcaggcagaagcgcagcatgggtctgaccctcgcagaaggggag
ctggctaagctggacacggagagggtgagagaccgcgtgtcgctggagagagaacgctcc
tgttccgaacacatcatctccaagatagaggaggttctgctgacgtcacagcccacagaa
gaggagaagtgcactactatgcagtatgtcatcctcacctatatgaaacacctgggggtg
aaagtaaaggaaccacgtagcctagagcccaaacgagtccgcatcaacttcctgcccaag
atcaagaagagcatcaaacctgagaaagagggggaggagaaggtgaagaagcctcgcttt
cccagcatcctcggccctcctcggcggcccagccgcgtggactcagcttcaatcagtaag
gccatggagttgaacaagcatcggggcccccagaagcagctctcccagcccgccctcagc
gtcttcgagcaaccagaattctcggcaggcggcatccgtgcccgcagccaattcagcgat
ccaggctctgacgcggccacccaccccttggcctacatcgcaccgcccccccacagtgcc
ccagccagccagggctccgacccgacgggacgcgactctgactcgggactcactccctcc
tctgccctgcccagactgagcaccgacgggctccactcgggcgacaccctggacgggatg
gtccacctaaccagcacccactttgacttcagcccttgcaccctggaccaattacaggag
gaggagcgtgaaagtgacagggctcaagagggaggcacgccgaaaccagcccagaggatg
gacgggttaggctgtggggatgtgccgagtgaggacgaccaggggaacgagattgagtgc
gagcaggaccctcccaactggcaggcgctggttagccgagaggtcctggcgggcctgact
ccacaggagatcaaaagacaggaagtcatcaacgagctcttctacacagagcgggcacac
ctgaggatgttgaaggtgctggataacgtgttctgccagaaactaacccgagacagcatc
ctgcctcctggagacattaaacacatcttcactaacctagaggagattgtccagctacac
gtgtggataacggaacagatgacggtcattcggaagaagaacgagacgtcagtgatagac
ctgataggagacgatctactagcttggttcagtgatgacgaggaggagaagatcaagcgg
gcagtgggtaccttctgcagtaaccagccctttgccctggaactcatcaagacccggcag
aagaaagaccaacgcttcacctcctttatgcaggaggctgagagcaaccgtctgtgtcgc
agactgcagctgaaggatatcattccagtggagatgcagaggctgaccaagtatccacta
ctgctggagagcatagccaagtacacagaagatgcagaggagagggacaaggtgaagagg
gccggggagtgctgcaggacgatcctcaactatgtcaaccagacagtgaaagaggcagag
aacaaacagaggttagaggactaccagagacgcctggacctgtcctctctcaaacagagt
gagaacccaatgatctcagagttcaagagtctagacctgaccaagaagaagatggtgcac
gagggacctctctcctggaaggtcaacaaagacaagaccatcgagctgtacacgctgctc
ctggaggacatcctggtgctgctgcagaagcaggacgagcggttggtcctcaagtgccac
agcaagaacttggcgggcaccgccgacaccaagcacatcttcagccccatcatcaacctc
aacaccgtgctggtgcgctcggtagccaccgacaacaagtccttctttgtgctgtctatg
tccgacaacggagcccagatctacgaactgatggcccagaccgtgtccgagcaaagaacg
tggcagtgtctgataacgcagagcgcagaaaccatgaagacgaaaacacacatcatacct
ttaccccaaaccgatgtggagcgagacgcagtagagattatcagcacgggggtgcccaaa
ctgaacaaagaccctgagctcacctccatgggaggtacccagtccccagaaaaagacgtc
tcttccttgccgggtctgcaacccacacccacatcgaccaacccatttgacggtgtcaaa
tcagacgacgaggaagaagaggactcgccactgccagacagaagagaagaacaagaagag
gaggaggaagtggaggaggtagatgaggaggaagttgaagcttttctggatggagagctg
gcagacagattgcccttcctccaggagaggtcacgcctgggcatcgccatcgacgacgag
gatcccgatgacgccttcggcatgccaccctccagagccgaggaggccctaagaaccttg
gccgccctgaggcaggtccttctcaaccacatgacgaacagagcagagggcagcgacaag
gacaaagagaaggggaaagaaaaagagcagaggaagggccgagcccctggaggccgcctg
ctgaggaccacgtccctgaggggcccagaggacaacaacagtatctcggccccaagcagc
gtagcagcaccctctactggctcctcggagaatggcgccttggagaagaccgaggcaggg
agggaggaggaggccccggggtccaatgaactaccatctggggacacaggtttctttgag
acttccgaggaatacggcagttacatggtcctggagggctacggggcctcgggggagagc
agcacggacaatgacggtcaggcgagtggcggggggggcccggacatcgacctgaagaag
ctgctctcctcatcctcgcagacagggggtgccggccccaaactcagacgccaggtcatg
acccacatccgcctgctccaggccaacctgcagcacctgaaggaagtggagaccaagtat
aatgaactgcgccaaaggctgactgaaacagctactgacacagaggagaacaaagataat
agttag
DBGET
integrated database retrieval system
