Oncorhynchus tshawytscha (Chinook salmon): 112228428
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Entry
112228428 CDS
T05605
Name
(RefSeq) HMG box transcription factor BBX isoform X1
KO
K21643
HMG box transcription factor BBX
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
otw03000
]
112228428
Transcription factors [BR:
otw03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
112228428
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GFIT
Motif
Pfam:
DUF2028
HMG_box
HMG_box_2
Motif
Other DBs
NCBI-GeneID:
112228428
NCBI-ProteinID:
XP_024249510
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Position
LG30:complement(31349375..31400650)
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AA seq
879 aa
AA seq
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MKGGGRGKEPPVEVSCKRPKRKCLQWHPLLSKKALDFSEEEEEDEEELEKESLLVRETRG
SKVPCGGPPEGEEDSSEQRARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAV
LEPREKQKYTDMAKEYKDAFMKANPGYKWCPATNKPVKSPCHTVSNTRNKVWSFPSNSPK
GCATAKKLPKTDSTPQLNFAMADPTKMGGLSMLLLAGEHALTAREISSSSSQSGATDVTK
YPDKSSLFQLAEISSSTRQPSLMDTAGKGKPLSWGDQAEMWSGTSQQGKPDVPTANVKSP
LFQLAEQISSDSSQSTAPEGKQCGQSALFQLAEMCLASEAGKMETQDDTCTPHIKTETVV
EEAGDNTPDLPLSFPPSSSMPTDASLLLLRGQAAIIKRKKDASTREPPKVVDKDKSPGPG
SPKKTLKKRPSSESELESLFYTIEAVAKGAWGDAEEDMPKKKARTAAVTILVESSSPKKR
AKPKAKRPLKAKEDERNVKDKEDDGRTELPLTVETVVNPASPKMEANISSSMEEPTSPPS
PPHIKHKVGERELEANAEGCGSRKSERSCKGALYKTLVSEGMLTSLRANVDRGKRGSFRS
ASDEGGWIDETWAFSQMGPSNFKKLKKSKSKDETAPGLGKLEEEFEKKFNSLPQYSPLTF
DKKSTVVTKKKTDISTAPEEQPPKPAKGQSPSQKNTLFHKIVSNYKEKKKKPNTLDKDIA
MRSDSPMLDSAAYATKAKPSPAPSATATLNPEAMGTSPSVPVGSQKRKARKSKITHLVRS
ADGRVSPAEEDKARDLTPEQDDKPLSQDTLCNETGCYNASKQEEADRSSAPEDLPAFFSL
AALAEVAAMENIHRGQHVIGDSQKKDMAKTPLLISCADQ
NT seq
2640 nt
NT seq
+upstream
nt +downstream
nt
atgaaaggtggaggaaggggtaaggagcctccggtggaggtgagctgcaagcggcccaag
cgcaagtgtctacaatggcacccgctactctccaagaaggccctggacttttcggaggag
gaagaggaggacgaagaagaactagagaaggagtcattgttggttagggagacccggggg
tcgaaggtgccatgcggggggcccccggagggggaagaggactcttcagagcagcgggcc
cgccgacccatgaatgccttcctgcttttctgcaagcgccaccgatcgctggtgaggcag
gaacaccctcgactggacaaccgcggtgccaccaagatcttggctgattggtgggccgtg
ctggagcccagagagaaacagaagtacactgacatggccaaggagtacaaggatgccttc
atgaaggctaacccgggctacaagtggtgccctgccaccaacaagccagtcaagagcccc
tgccacactgtcagcaacacccgcaataaagtgtggtccttcccttccaactcccctaag
ggctgtgccactgccaagaaactgcccaagactgacagcacaccacagcttaatttcgcc
atggcagatcccacgaagatgggtggcctaagcatgctactgttggctggggagcatgcc
cttactgccagagagatttcctccagctcatcacaatctggagccacagatgtcactaag
taccctgataaatcctccctattccaacttgctgagatctcttccagcacgcgtcagccg
agtttaatggacacagcgggcaaagggaagcccttgagttggggtgaccaggctgaaatg
tggtctggaacctcacagcagggaaagcctgacgtacccactgccaatgtcaagtcccct
ctttttcaactggcagagcagatctcctctgattcgagccagtcgactgcaccagaggga
aagcagtgtggccagtccgctctcttccagcttgctgagatgtgcttggcctccgaggca
gggaagatggagacacaggacgatacctgcaccccacacatcaaaactgagactgtggta
gaggaggctggggacaacacccctgatcttcctctctcctttcccccatcttcctccatg
ccgaccgatgctagtctcctgctgctcagaggccaagcagccataatcaaaaggaagaaa
gacgccagcaccagagagccgcccaaagtggtggacaaagacaagagccctggtcccggc
tcacccaaaaagaccctcaagaagcgaccttcatccgagtcggagttggagagcctcttc
tacactatcgaagccgtggctaaaggggcctggggcgatgccgaggaggatatgcccaag
aagaaggctcgcaccgccgccgttaccattctggtagagtccagctcacccaaaaagagg
gccaagcccaaagccaagaggcccctgaaggctaaggaagatgagagaaatgtgaaggac
aaagaggacgacggacgcacagagcttccattgacagtggagacggtggtgaatccagca
agccccaagatggaggccaatattagcagcagcatggaggagcccacctcccctcccagc
cccccgcacatcaagcacaaagtcggggagagggaactggaggccaacgcagaggggtgt
ggctccagaaagtctgagagaagctgcaagggggcgctgtacaagaccctggtgtcggaa
gggatgctgacctcactgagggccaacgtggacagaggcaaaagaggttcttttcgaagt
gcatctgatgaaggaggctggattgacgagacctgggctttctcacagatgggacccagt
aatttcaagaagcttaagaagtccaaatccaaagacgagaccgcgccaggtttggggaaa
ctagaggaggagtttgagaagaagttcaacagcctgccgcagtacagccctctgacattc
gacaaaaagagcaccgtcgtcaccaagaagaaaactgacattagtaccgcaccggaggaa
caacctccgaaacctgccaagggtcaatctccatctcagaaaaatactttattccacaag
attgttagcaattacaaggagaaaaagaagaagcccaatactttggataaagacatagcg
atgcgtagtgactcccccatgttagactcggctgcctatgccaccaaggcaaagccgagc
ccagcccccagtgccaccgccacgctgaacccagaagccatgggaactagccctagtgtg
ccagtgggcagccagaaaaggaaggccaggaagagcaagatcacccacttggtgcgctcg
gccgacggcagggtatccccagccgaagaggacaaagccagggacctgaccccggagcag
gatgacaagccattatcccaagatactttatgcaatgaaacagggtgttacaacgcatcc
aagcaagaggaagcggacaggagcagtgcacctgaagacctgcctgccttcttcagcctg
gctgcccttgcagaggtggcagccatggagaacattcacagaggccagcatgtgattggt
gacagccagaagaaagacatggccaagacccctttgctcatctcctgcgctgaccaatga
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