Oncorhynchus tshawytscha (Chinook salmon): 112228464
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Entry
112228464 CDS
T05605
Name
(RefSeq) thrombospondin-3a
KO
K04659
thrombospondin 2/3/4/5
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04145
Phagosome
otw04510
Focal adhesion
otw04512
ECM-receptor interaction
otw04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
112228464
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
112228464
09144 Cellular community - eukaryotes
04510 Focal adhesion
112228464
09142 Cell motility
04820 Cytoskeleton in muscle cells
112228464
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112228464
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
otw04147
]
112228464
00536 Glycosaminoglycan binding proteins [BR:
otw00536
]
112228464
Membrane trafficking [BR:
otw04131
]
Endocytosis
Phagocytosis
Opsonins
112228464
Exosome [BR:
otw04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
112228464
Exosomal proteins of colorectal cancer cells
112228464
Exosomal proteins of bladder cancer cells
112228464
Glycosaminoglycan binding proteins [BR:
otw00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
112228464
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TSP_C
TSP_3
COMP
EGF_CA
EGF_MSP1_1
cEGF
EGF_3
Motif
Other DBs
NCBI-GeneID:
112228464
NCBI-ProteinID:
XP_024249571
LinkDB
All DBs
Position
LG03:complement(16143388..16157432)
Genome browser
AA seq
955 aa
AA seq
DB search
MGARRDVPTFLALSTFLFVATCEPMDQNDMQVIDMLTLDSKTSVSAVEKVTGAMSVFSDI
YIVSTFRLPPKMGGVLLGLYSKEENKKYLELAIMGKINKALVRYVREDGKLHTVNLQSTN
LADGRTHSIILRIGGLRRDNLHLELYVNCRLADSSQGLPPLVPLPAEKVEIRNGFKAYAR
LQGAVESLKIALGGSVAKAGTLTDCPFQGDSSVYSTVGTTAEVNSILGDHTKALIGQLII
FNQILGELREDIREQVKEMSLIRNTILECQVCGFHDPRSRCSPNPCFKGLSCMETSDYPG
YRCSPCPEGMTGNGTHCQDIDECSIAQPCYSPGACINTVKGFSCELCPPGLWGPPLFGVG
LEYANHHKQECADIDECIEVANACVPHSMCTNTIGSFRCGGCKVGYLGNQTVGCVPRRSC
ATLSFNPCDANAHCIIERNGEVSCACNIGWAGNGNTCGTDTDIDGYPDRSLPCMDNDKHC
KQDNCVYTPNSGQEDADNDGIGDQCDEDADGDGIKNVEDNCRLEPNKDQQNSDTDSFGDA
CDNCPNVPNIDQRDTDSNGQGDACDNDIDGDGIPNVLDNCPKVPNPMQTDRDGDGVGDAC
DSCPEISNPMQTDIDNDLVGDVCDTDQDTDGDGHQDSRDNCPDHPNSSQLDSDNDGLGDD
CDDDDDNDGFPDVQDNCRLITNPNQKDSNSNGVGDVCENDFDNDSVWDLIDVCPESSEVT
LTDFRAYQTVILDPEGDAQIDPNWVVLNQGMEIVQTMNSDPGLAVGYTAFNGVDFEGTFH
INTVTDDDYAGFIFGYQDSSSFYVVMWKQTEQTYWQSTPFRAMAQPGLQLKAVKSRTGPG
EYLRNALWHTGDTNEEVKLLWSDPRNVGWRDKTSYRWQLSHRPQVGYIRVKLYEGTEMVA
DSGVVIDTTMRGGRLGVFCFSQENIIWSNLRYRCNDTVPDDFNPYRKQVLLHIKV
NT seq
2868 nt
NT seq
+upstream
nt +downstream
nt
atgggtgcgaggcgcgatgtgccaacttttctggctctatccacatttctattcgttgca
acatgtgagccaatggaccagaacgatatgcaagtcattgacatgctaaccctggactcc
aagaccagtgtgtctgcggtggagaaggtgacaggtgccatgagtgtgttcagtgacatc
tacatcgtgtccacattccgcttgcctcccaagatgggaggggtgctgctgggcctctac
agcaaagaggagaacaagaagtacctggagctggccatcatgggaaagatcaacaaagct
ctggtgcgttacgtgagggaggatggcaaacttcacacagtgaacctccagagcacaaac
ctggctgatggtcgcacacactccattattctccggatcggaggcctgcgcagagacaac
ctacacctggagctctacgtcaattgtcgattggctgactccagccagggcctccctcca
ttggtccctctccccgcggagaaggtggagattcgtaatggcttcaaggcctacgcaagg
ctacagggtgctgtggagtccctcaaaattgcactagggggcagtgtggccaaagcaggg
accctgacagactgtccattccagggggattcatcagtctacagcacagtcggtacgact
gcagaagtgaactccattctaggagaccacacaaaggctctgattggtcagctgatcatc
tttaaccagatcctaggagagctgcgagaggacatcagagagcaggtgaaggagatgtcc
ctgattaggaacaccattctggagtgccaagtgtgtggcttccacgaccctcgttcccgc
tgctcccccaacccctgttttaagggcctgtcctgcatggagacctctgactacccaggg
taccgctgtagtccctgtccggagggcatgacgggcaacggaacccactgccaagacatt
gacgagtgttccatagcccagccctgctactctccaggtgcgtgtataaacacagtgaag
ggtttcagctgtgagctctgcccccctggtctctggggcccacccctctttggggtcgga
ctggagtacgccaaccaccacaaacaggagtgtgcagacatcgatgagtgtattgaagtt
gccaacgcctgtgtgccccactccatgtgtaccaacaccatcggctcgttcaggtgtggt
ggctgtaaggtgggttacttggggaaccagacagtgggctgcgtgccccgtaggtcctgt
gccacactcagctttaacccttgtgatgcgaacgcccactgcattatagagaggaacgga
gaggtgtcctgtgcgtgcaacattggctgggccggtaacgggaacacttgtggcacagac
acagacattgatggatacccagaccgctctctgccctgtatggacaatgacaagcactgt
aaacaggacaactgtgtttacacacccaactcaggccaggaggacgcagacaacgacggc
atcggagaccagtgtgacgaggacgcagatggggacggcatcaagaatgtggaggataac
tgtcgactagaacccaacaaagatcagcagaactcagacacagactctttcggtgacgcc
tgtgacaactgtcccaatgtccctaacattgaccagagggatacagacagcaacgggcaa
ggagacgcctgtgacaatgacatagatggagatggtatccccaacgtgctagacaactgc
cccaaagtccccaaccccatgcagacagacagggatggagacggggtaggagacgcctgc
gacagctgccctgagatcagcaaccccatgcagacggacattgacaatgacctggtgggg
gatgtgtgtgacactgaccaggacacggatggggacggtcaccaggattccagggacaac
tgccctgaccatcccaacagctcccagctggactcggacaatgatggccttggggacgac
tgtgatgatgacgatgacaatgacggattcccagacgtacaagacaactgcagactcatc
accaatcccaaccagaaagattctaacagtaacggggtgggcgacgtgtgtgagaacgac
tttgacaatgattcagtctgggatctgattgatgtgtgccctgagagttcagaggtcaca
ctgacagacttcagagcctatcagacagtcattctggatccagagggcgatgcccagatc
gatcccaattgggtggtgctcaatcagggcatggaaatagttcagaccatgaacagtgat
cctggtttagctgtgggctacacagcgttcaacggggtggactttgagggcaccttccac
atcaacacggtgacggacgacgactatgcaggcttcatcttcggctaccaggactcctct
tccttctacgtggtgatgtggaaacagacagagcagacctactggcagtcgacacccttc
agggccatggcccaacctggcctgcagctcaaagcagtgaagtcccgtacagggcctggt
gagtacctgcgtaacgccctgtggcacacaggggacaccaacgaggaggtgaagctgctg
tggtcggacccacggaacgttggctggagagacaagacatcttaccgctggcagctcagc
cacaggccccaggtgggctacatcagggtgaagttatatgaggggacggagatggtggct
gactctggcgtggtgattgacactaccatgagaggcggacgactgggggtcttctgtttc
tcccaagagaacatcatctggtccaacctgcgctaccgctgcaacgacactgttccagac
gacttcaacccatatcgcaaacaggttctgctgcacatcaaggtgtga
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