Oncorhynchus tshawytscha (Chinook salmon): 112228529
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Entry
112228529 CDS
T05605
Name
(RefSeq) collagen alpha-1(XXVI) chain
KO
K24358
collagen type XXVI alpha (EMI domain-containing protein 2)
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
otw04990
]
112228529
Domain-containing proteins not elsewhere classified [BR:
otw04990
]
C1q domain-containing proteins
Emilin / mutimerin group proteins
112228529
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
EMI
Motif
Other DBs
NCBI-GeneID:
112228529
NCBI-ProteinID:
XP_024249694
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All DBs
Position
LG30:24953380..25015409
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AA seq
441 aa
AA seq
DB search
MTASIILSFLCIWMCSPSLSQGTGFVYQFPGVTLQRIHTEHTAGPLAGTNSARRNWCQYT
VSKTVSCQVHNGTETLVQRVFQSCRWPGPCSNLISYRTLIRPMYRLTFRQVTALEWRCCP
GFLGDDCKEECMNCTGYADMNDRLSMLESKIVLLEEAGPPPLLFRYSPDGSSDNEVGLGA
PKPTPITPPAIGLPGARGLPGPAGLPGVAGPPGRTGETGLAGKTGPMGPRGPQGQRGAQG
ERGVPGPAGPLGPASSFSHRADAFGLRELGQYEEAALHSQNNQRAVTGPPGPTGSPGPPG
RPGPTGPAGNPGTPGRNAGVGPSGKPGDRGLKGDSGERGPPGLRGEHGQPGVPGPKGEPE
DTQAEGEGLQQLREALKILAERVLILEHMIGIHESGSGLDILSDLVPMFKNKRAGPKTLL
HSLTTGDRKLIGEERVRRRGN
NT seq
1326 nt
NT seq
+upstream
nt +downstream
nt
atgacagcttcaataattttgagctttctctgtatttggatgtgttcacccagtctgtca
caagggaccgggtttgtctatcagtttccaggtgtgacattgcaacgcatccacactgaa
cacactgctggaccccttgcaggcaccaactcggctcgcaggaactggtgtcagtacaca
gtgtcgaagactgtgtcatgccaagtgcacaacgggacggagacgctagtacagcgggtg
tttcagagttgccggtggccaggaccctgttctaacctcatcagttacaggacgctgatc
cggcccatgtacaggctgacgtttcgccaggtgacagcactggagtggaggtgctgccca
ggcttcctgggagacgactgcaaagaggagtgtatgaactgtactggctatgctgatatg
aatgatagactgagtatgctggaatccaagattgtgttgctggaggaggcgggaccacca
cctctcctattcagatactccccagatgggtcatcagataacgaggttggactgggagcc
cccaaacccacccccatcactccccccgcaatcggactaccaggagccagaggcctccca
gggccagctggactcccaggtgtggcgggaccccctggacgcactggagagacaggccta
gcagggaaaactggacccatgggacccagagggccccagggccagcgaggagcccaaggg
gagagaggtgtacctgggccagctgggcctctggggccagcctcttccttctctcacaga
gcagatgcgtttggtctgagggagctgggccagtatgaagaagctgcactccattcacag
aacaaccaaagagctgtgaccggtcccccaggccccaccggatcccctggtcccccaggc
cgtccgggacccacagggcctgctggaaacccaggtaccccagggagaaacgctggtgtt
ggtccctcaggcaagcctggggatcgtgggcttaaaggagactccggtgaaaggggaccc
ccaggactcaggggagaacatggccagccaggtgtaccagggccaaagggtgagccagaa
gatacccaggctgagggggaggggctgcagcagctgagagaggctctgaagatcttggct
gagagggttctcattctggagcacatgatcggcattcatgaatctggttctggcctggac
atcctgtcagacctggtgcccatgtttaaaaacaaaagggcaggacccaaaaccctgctc
cactctctcaccacaggagacagaaagctgattggagaggaaagagtgaggaggaggggc
aattag
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