Oncorhynchus tshawytscha (Chinook salmon): 112228542
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Entry
112228542 CDS
T05605
Name
(RefSeq) BRCA1-A complex subunit RAP80 isoform X1
KO
K20775
BRCA1-A complex subunit RAP80
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
112228542
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
otw03400
]
112228542
DNA repair and recombination proteins [BR:
otw03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-A complex
112228542
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RAP80_UIM
Motif
Other DBs
NCBI-GeneID:
112228542
NCBI-ProteinID:
XP_024249715
UniProt:
A0AAZ3P8K2
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All DBs
Position
LG30:complement(24478595..24499239)
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AA seq
1146 aa
AA seq
DB search
MPPRKKRENRGTDDCPRKRRRAQEEGNVVISDRDEDEDFRPTSSSSRGERKREKESRTRT
NEMTEEEMLDLAMRLSKQEASSAALRQRQEEEAVRKAIAESLYADSPTHPHSESSLGSGS
PTQQCQNSPPEGESSIQPPRCKLSYPNHGVADREGVRGGGVHVGVAPSDRRRRGKKEGSP
LLDMPDLSQTQKVYSQSSPLSQASTSVPLPSSQEEGSSQRNLFGDRSAKAIESQDYNNST
KSDSQSQLRIKSPGFPSTTAPQANKPVLCLEKLSQDLLVDCQASGFLLKGHPSLTLPTKS
QKSQSYQPKSPTFSNTPVFSKTERGVEPGQSSPSFPKRAMFSNCDSGEEEKEASPTIPKN
LVFFKTDRGKAEEQGSPTSPKSTMFSKTERGLEEKETFSGSPVFPRTDQIRDQGPQSCVE
SVSATGDYEDGDRDDAVKSRDASECLPPCPRTTLSLNKRFVPIRKTAGVSDKVVDQEERE
GESSQRTVNRISMPAKLAAEEDLNSEELTLALETQPMQELTSNMALRWSDDDEEENGPEK
SAHSPSPVFPQENDLPQPSNQGLSPNTHNHRSPQHRHSPCLVPKKRTHNFEGAACEEGES
QSKCIRKKFTFKGMYGAPSPSLLRQAAGRSQDEAKGGSTSSHQPLASSSRLSPSTDGQGY
GGVVRYYWGVPFCPRGQNPDAYTQVILSQLEVYEKSLKETQRGLLRKAGWGEPVLPGPPE
KPFSRRGRLERHRAPRLLEEEERGGKRQEELVEVVEDDDDDEEKRARQLSRWGVEGGGKR
GRQEWKDCQDLFVSSPEQEEKSPSPVFHADTSQLILLQRRLGLRRTEERLAEKQPPDLLE
EREEDEKEEKMDDKEGGEKREEEEVDVRGLQVPETQLGDDSTQDLMVTSPAQPQPKSQSL
PQIQTFFSSPRPLEQREEGMLVVGEEEGRRSSPVGIPAVGEDVRMEEDIPEPAFPRSPNM
DCPMCMRLFPLTEIEMHAAYCDGTTAIMEEEMAEESQSQVSVKARRKRTRRGENIGEEQP
SSSGSGKVVQGEKCFLCQQLFPLKYHEKHVEDCIKNKEFSKAAPRDGQSGDFLSALDQTE
HIYSGTAEAKPCDTTVNNQKSGLIDDLDTAESGGRGDFSAPGFRVSTSPIQSFTPVSEAT
DCLIDF
NT seq
3441 nt
NT seq
+upstream
nt +downstream
nt
atgcctcctcggaaaaagcgagagaacagaggcaccgatgattgtcccaggaaacgacga
cgagctcaggaagagggcaatgtcgtcatctcagatagagacgaggatgaagacttcaga
ccgacatcatcatcatcaagaggggagcgcaaacgggagaaggagagtagaacacgaaca
aacgagatgacagaggaggagatgctggacctggccatgagactgagtaaacaggaggcc
agcagcgctgctctccggcaacgacaggaggaagaggccgtgaggaaggccattgctgaa
agcctctatgcagacagccctactcatccccactcagaatcttcgctcgggtcagggagc
cctacacaacaatgtcaaaattctcctccagagggagagagcagcatacagccccccagg
tgtaaactctcctaccctaaccatggtgtggctgacagggagggagtccgcggtggaggt
gttcatgtaggggtggctccctcagacaggaggaggagggggaagaaggagggaagccca
ttactagatatgcctgacctgtctcagacccagaaggtctactcccagtcctcccccctc
agccaagcttccacctcagtgcctctcccatcctcacaggaagaggggtcttctcagagg
aaccttttcggagaccgctcagccaaggcaattgaatctcaggactacaacaactccaca
aagagtgactcccagtcccaactcaggatcaagtcccctggtttcccttccactacggct
ccccaagccaacaaacctgtcctgtgcctggagaagcttagccaggacctcctagtagac
tgtcaggcctctgggttcctactaaagggtcatcccagcttaacgcttcccacaaagtcc
cagaaatctcaatcttatcagcccaagagccccacattctccaatacccctgtgttttcc
aaaacagagagaggtgtggaaccaggccaaagtagtccctcctttcctaaacgcgccatg
ttctcgaattgtgattcaggagaggaagaaaaagaggccagtcccaccattcctaaaaac
ctggtctttttcaagactgatagaggaaaggcagaggaacaagggagtccaacttctcct
aaaagcaccatgttctctaagactgaaagaggactagaagagaaagagaccttctctgga
agtccagtctttcccagaactgatcagataagggaccagggtccacagagctgtgttgaa
agtgtctctgcaacaggagactatgaggatggagacagagatgatgctgtgaagagcagg
gatgcctccgagtgccttccaccatgccccagaacaaccctgtccctgaacaagagattt
gtgcctataaggaagactgctggagtttcagacaaagttgttgaccaagaggaacgcgag
ggtgaatcctcgcagagaactgtaaacaggattagcatgcctgcaaagttggctgcagaa
gaagaccttaattcagaggaacttacattggctttggagactcagccaatgcaggagtta
accagtaatatggcgctacgctggtcagatgatgacgaagaggaaaatggtcctgaaaag
tcagctcactcgcccagcccagtcttcccacaggagaatgacctccctcagccaagcaac
cagggtctctccccaaacacccacaaccaccgttccccccaacacagacacagcccctgc
ctcgtccccaagaaacgcactcacaacttcgaaggcgccgcgtgcgaggagggggagagc
cagtccaagtgcatccggaagaagttcaccttcaagggcatgtatggagccccctctccc
tctcttctcagacaggctgcaggtaggagccaggatgaggccaaaggcggaagcacctct
tcccaccagcccctggcctcctccagccgcctctctccctccacagacggccagggttat
gggggagtggtgcgctactattggggtgtgccattctgtccacgggggcagaacccagac
gcctacacacaggtgatcctgtcccagctggaggtgtatgagaagagcctgaaggagacc
cagaggggtctgctgaggaaggcaggctggggggagccagtcctccctgggcccccagag
aaacccttctccaggaggggacgcctcgagagacacagggccccacgactcctggaagaa
gaggagagagggggaaaacgtcaggaagagctagtggaggtggtagaagatgatgatgat
gatgaagagaagagggcgagacagctgtcacggtggggggtggaagggggagggaagaga
ggaaggcaggagtggaaggactgccaggatctgtttgtgtcctctcctgaacaagaggaa
aaatctccctcccctgtatttcatgcagataccagtcagctaattctacttcaacggaga
cttggccttagaagaacagaggaaagactagcagaaaaacaaccacctgacttactggag
gagagggaggaagatgagaaggaagaaaagatggatgataaagagggtggagagaagagg
gaggaggaagaagtggatgtcagaggcttacaagttccagagacccaactcggtgacgac
agcactcaagacctcatggtcaccagccctgcacagccccagccaaagagccagtccctg
cctcagatccagacctttttttcatcaccccgccctctggaacagcgtgaagaggggatg
ttggtggttggagaggaggaggggcggaggagtagccctgtggggatccctgctgtagga
gaggatgttcggatggaggaggatatcccagagcctgccttccctcggagccccaacatg
gactgtcccatgtgcatgcgtctcttccccctgacggagattgagatgcacgctgcctac
tgtgacggtaccaccgctatcatggaggaggaaatggcagaggagagccaatcgcaggtt
tcagtcaaggctcgtaggaagaggaccagaaggggtgagaacattggagaggagcagccc
agctcttctggctctggcaaggtggtacagggagagaagtgcttcctgtgtcagcaacta
tttcctctcaagtaccatgagaagcatgtagaggactgcatcaagaataaagagttctcc
aaggctgcacccagagacggacagagtggagactttctgagtgctctggaccagacagag
catatatattcagggactgctgaggccaaaccatgtgatactaccgtcaataaccaaaaa
agtggcctgattgatgatctggacacagcagaatctgggggaagaggagacttcagcgcc
ccaggtttcagagtgagcacctcgcccatccaatccttcacccctgtctcagaagccaca
gactgccttatcgacttctaa
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