Oncorhynchus tshawytscha (Chinook salmon): 112228563
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Entry
112228563 CDS
T05605
Symbol
trpv1
Name
(RefSeq) transient receptor potential cation channel subfamily V member 1 isoform X1
KO
K05222
transient receptor potential cation channel subfamily V member 1
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04080
Neuroactive ligand-receptor interaction
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
112228563 (trpv1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
otw04040
]
112228563 (trpv1)
Ion channels [BR:
otw04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
112228563 (trpv1)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ank_2
Ank
Ion_trans
Ank_5
Ank_3
Motif
Other DBs
NCBI-GeneID:
112228563
NCBI-ProteinID:
XP_024249742
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Position
LG30:22909649..22938889
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AA seq
804 aa
AA seq
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MSKSKGPEYPSFSLETDDRTDDERAQSRQVKKPDRLVSALGLGSSGGPKAPMDSDYQDEL
EEAAPKIRFNLNFDKEVRCLEENKEDRDSKRFDIKRLFEAVSTGDVMKLEGLHQYLHQSM
KKLSNTEYQSYGKNVLLKALLNLRNGRNNTIEYLLDISEKMGDIKELVNAAYTDSYYKGQ
TALHIAIERRSTYFVELLIKKGANVHAKACGKFFQLNDGPSFYFGELPLSLAACTNQPEV
VDFLLENDYQRVDVRESDSLGNMVLHALVVLADNTPENTDFITSMYDHILTTAARLHPKW
RLEDIENNQGLTTIKLAAKTGKIGLFKHMMHREFQERETRNLSRKFTEWVYGPVHSSLYD
LDSLDSYEKNSVLEIIVYSSDIPNRHEMLQIEPLNRLLEEKWDKFAARMFFLNFLVYLVY
LSVFTAVAYYRKKGTPPFTLEHTRQEYLRLAGQLFITVGACYFFIRGILDLKRKRPSLDT
LLIDGYSEILFFLQAIFFLASSVLYCCGREEYLGFFVLCLALSWVNLLYFSRGYRHMGIY
SVMIQKMILCDILRFLFVYVTFLFGFSAAVVTLLMEPELPANNTAQPINSTDGRGRTFFL
PTEDSCIKPTFRNISHTIMELFKFTIGMGDLEFTERYQYKEVFYMLLISYIVLTYILLLN
MLIALMSRTVEKMSLESTSIWKLQRALTILDLERSLPRCLRRRLRSGVDKDLGTRAGEKD
RRWCFRVEEVNWNKWNTNLGIINEDPGSGDTARLSPTHSSRTLGRERSWRGFLGNVSRRQ
HTQPQQQTQVESTEMSSLSPLNHV
NT seq
2415 nt
NT seq
+upstream
nt +downstream
nt
atgagcaagtcaaagggcccagagtacccttccttctctctggagacggatgacaggaca
gatgatgagagggcacagagcagacaggtgaagaagcctgaccggctggtgtctgcccta
ggcttaggcagttcgggggggcccaaagcccccatggactcagactaccaggatgagctg
gaggaggccgctcccaagattagattcaatctcaattttgacaaagaagtacgatgtttg
gaggagaacaaagaggacagggacagcaagaggtttgacatcaagaggctgtttgaggcc
gtgtccactggtgatgtcatgaagctggaggggctgcatcagtacttgcatcagtccatg
aaaaagctctccaacactgagtatcaatcgtatggtaaaaacgtcctgctgaaggcccta
ctgaatctgagaaatggcagaaataacacaattgaatatctccttgacatctcagagaag
atgggggacatcaaagaattagtaaatgctgcatacacagacagctattacaaaggtcaa
acagcccttcatattgccattgagagaaggagcacctattttgttgagctattgatcaag
aaaggagcaaacgtccatgccaaagcctgtgggaaattcttccagctcaatgatggaccc
agcttctactttggtgagctacctctatccctggctgcgtgcaccaaccagcctgaggtg
gtggactttctgctggagaatgactaccagagagtggatgtgagggagagtgattctctg
ggtaacatggtgttgcatgccctggtggtgttggctgataacacaccagagaacactgat
ttcatcacctctatgtacgaccacatcctcacaacagctgcccgcctgcaccccaaatgg
aggctggaggacattgagaacaaccagggcctgacgactataaaactggctgccaagact
ggcaagatcgggctgtttaagcacatgatgcatcgtgagttccaggagagggagaccaga
aacctgtcccgtaaattcactgagtgggtttacggacccgtccactcctccctgtatgac
ctggactcactggactcctacgagaagaactctgtcctggagatcatcgtttacagcagt
gacattcctaatcgccatgagatgctgcagattgagcctctgaacaggctactggaggag
aagtgggacaagtttgctgctcgtatgtttttcttaaacttcctggtttacctggtttac
ctctccgtcttcactgctgtcgcctactacaggaagaagggaacgccaccttttactctg
gaacataccagacaggagtacctgcgactcgccggtcagctttttataactgtgggagcc
tgctatttcttcataagagggatattagacttgaagagaaaacgtccaagcctggacact
ttgctgattgacggatacagtgaaatccttttttttctgcaggcgatcttcttcctggcc
tcctcagtgctgtactgctgtggtagggaggagtacctggggttttttgtgctgtgtctg
gctctcagctgggtcaacctgctctacttctccaggggatacagacacatgggcatctac
agtgtcatgatacagaagatgatcctatgtgatatcttgcgctttctctttgtctacgtt
accttcctctttgggttttcagcagcggtggtcactttgttgatggaacctgaattgcca
gccaataatacagcacagccaataaacagtacagatggaagaggtcgtacctttttcctt
cccactgaggattcgtgtataaaacccaccttcaggaacatctctcacactatcatggag
ctgttcaagttcaccatcggcatgggagacctggagttcacagagaggtaccagtacaag
gaagtgttttacatgctgctaatctcctacatcgtgctcacctacatcctgctgctcaac
atgctcatcgccctcatgagccgcactgtggagaagatgtccctggagagcaccagcatc
tggaaactacagcgggccctcaccatcctggatctggaaaggagcctgcctcgctgcttg
agaaggaggcttcgttctggggtggacaaggacctggggaccagggctggagagaaagac
cgccgatggtgcttcagagtggaggaagtcaactggaacaaatggaacaccaacctggga
ataatcaatgaggatccagggagcggagatacggccaggctgtcccctacacacagcagc
agaacgctaggcagagagaggagctggcgggggttcctgggaaatgtcagtcgaagacaa
catacacagcctcagcaacaaacacaagtagagagcacagagatgtcctctctgtctcct
ctcaaccatgtctga
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