Oncorhynchus tshawytscha (Chinook salmon): 112228588
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Entry
112228588 CDS
T05605
Name
(RefSeq) mediator of RNA polymerase II transcription subunit 13-like isoform X1
KO
K15164
mediator of RNA polymerase II transcription subunit 13
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
otw03021
]
112228588
Transcription machinery [BR:
otw03021
]
Eukaryotic type
RNA polymerase II system
Mediator complex
CDK-module
112228588
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Med13_C
MID_MedPIWI
Med13_N
Motif
Other DBs
NCBI-GeneID:
112228588
NCBI-ProteinID:
XP_042165592
UniProt:
A0A8C8H9H5
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Position
LG30:complement(21521097..21670023)
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AA seq
2188 aa
AA seq
DB search
MSSCFVPNGASLEDCHSNLFCLADLTGIKWKRYVWQGPTSAPILFPVTEEDPILCSFSRC
IKADVLSVWRRSQRPGRRELWLFWWGDDPNFAKLIHHELTAEEDGVWESGLSYECRTLLF
KAIHNLLERCLMNRSFVRIGKWFVKPYEKDEKPINKSEHLSCSFTFFLHGESNVCTSVEI
NQHQPVYHLSDEHLTLAQQASSPFQVILSPFGLNGTLTGQSFKLSDPPTQKLIEEWNQFY
PISPSSKDKDKNYSPSEDKMEYMDWEDDSLAAVEVLVGGVRMVYPACLVLVPQSDIPAVV
PQGSSHCTAIYSGGHQVPASQRDPAISSVTLTPPTSPEDAHTGTMMDSQSALKWVKMSSA
VDGFSVDSTSHHELKIPRRLASQVVERVWQECNINRAQNKRKFSATANGTCEEELMEKVG
AWDFVESTHRSNCNCSRHKALKQRGGCTPGQPQSAGQPQSAGQPQSAGQPTHTQPPTKHK
TGGDKPEKSDKQTKRPQTPFHHRSAACDDVTMETKAAGQRLAMRAQQEGGRFPGLHPTDG
VTKTPQRHDGGVGSAGGSSEMTGSPQPPPLSPHPCERDRGEEMGDGSLKNPSTPHSQHFY
QPPPEPCLAEQKGGVGDHHGLDGLAQHFHHHHTAYPPEPLEPTVYVSSAVNLEEDGSPAP
WRFFNLPRRKEAAIPTPTLPWDKLRDRERDEASGGQEVVSVTELMATSKRPLKVSEERVQ
MYIQRRNQYLAAAITDDDHEPEVDPYAFEDGDVKFSFSDKKDKTGGERQPGKKHKGEDGA
AGPSDDAAREAANARTASTSLIHETDLAVSINDLDNLFNSDEDELTPGSRRAVNGTDNTS
GTKEPKPAPLDPVSCISSADLHQMFPTPPSLEQHIMGYSPMNMGSKEYGAIEAGHGMTNL
DGASSLGGHYKIEVEEGYCSPKPQEIKDFSFVYKPELCQAFVGCSMFAPMKTLPSQCLPP
IKLPEECIYRPSWTTVGKLEMLNHPHVPSMAYLNKDSNIPSVGSAMDQDYSQSYTPQTHT
PFMSNSAPPSNSGTGILPSPATPRFSAPTPRTPRTPRTPRGPASVQGSLKYENSDLYSPA
STPSTCRPLNSVEPATVPSIPEAHSLYVTLILSESVMNLFKDCNFDSCCICVCNMNIKGA
DVGVYLSDPTGEAQYPCTCGFSAVVNRRYGNGSGLFLEDELDIIGRDSDVSREAEKRFEA
LRQHSLERTGGGGRGERVPDELILLLQDQCTNPFSPMAGMEPDSLAARGPVGCPVPACVR
VEERDYHSDCYMALEHGRQFMDNMSGGKVDEALVKSTCLHHWSKQNAVDISALCSQDVLR
VLLSLQPVLQDAIQKKRTVRSWGVQGPLTWQQFHKMAGRGSYGTDESPEPLPIPTFLVGY
EYDFVVLSPFGLPYWEKLLLDPFGSHRDVGYLVVCPDNEALLQGAKSFFRDLTAVYESCR
LGQHQPISKGHPDGIVRVGGSAAKKLAEQPVSDWFIKAASSNSDAFAKLKLYAQVCRHDL
APYLAAQPLDSSLLTQPTPPPATNQSSSTQSSGSSSTTSACPQNSATPSLPNNNSSSVPS
NNTGVANSANSTASSGSQPSSFPPFGTMSMQNQGQGGGTQGGQLGQQAGAQNAGLTGVDS
ASQAQSPTEPLESTMEREKVGVPTDGESHAITYPPAIVVYIVDPFTYEEPEAGSSVWTLG
LLRCYLEMLQFLPPHIRNSVSVQIIPCQYLLQPVRSEERHIYAQHLKSLAFSVFSQCRRP
LPRSTNVKSLTGFGPGLAINTALKSPERPECLRLYTPPFILAPTKDKQTELGETFGEASQ
KYNVLFVGYCLSHDQRWLLATCTDLYGELLETCIISIDVPNRARRKKGSARRSGLQKLWD
WCLGLVQMTSVPWRVVIGRLGRMGHGELRDWSILLSRRNLQSLSRRLKEMCRMCGISASD
TPSILSACLVAMEPQCSFVIMPDSVSTGSVFGRSTTLNMQTSQLSTPQDTSCTHILVFPT
SAFVQVASSNYTTDTNIDIAFNPIPDGSDAIGIFDLLDQENELVDPDIINILPSSPTTSP
VHSPGGHYHQGGDGSKGQSTDRMESHDEAPNILQQPLALGYFVSTAKAGALPDWFWSACP
QAQNQCPLFLKASLHLHVSSVQSDELLHSKHSHPLDSNQTSDVLRFVLEQYNALSWLTCD
PATQDRRSCLPIHFVVLNQMYNFIMNML
NT seq
6567 nt
NT seq
+upstream
nt +downstream
nt
atgagttcttgttttgtaccaaacggggccagcttggaggattgccattccaatctattt
tgtctggcggacttgacggggatcaaatggaagcggtacgtgtggcaaggccccacctcg
gcacccatcctcttcccggtgactgaggaggaccccatcctgtgcagcttcagccgctgc
atcaaagcggacgtgctgagtgtgtggcggcggagccagaggcccggacgtagggagctc
tggctcttctggtggggggacgaccccaactttgccaagctgatccatcacgaacttaca
gctgaggaagacggtgtgtgggagagtggtctgtcctatgagtgcaggacgctcctgttc
aaagcaatccataacctgctggagcggtgtctcatgaaccgtagcttcgtacgcatcggc
aaatggttcgtcaagccctacgagaaagatgagaagcccattaataagagtgaacacctg
tcatgctcgttcaccttcttcctccatggggagagtaatgtgtgcaccagcgtggagatc
aaccagcaccagccagtctaccacctgagtgatgagcacctcaccctggcccagcaggcc
tccagccccttccaagtcatcctaagtccgtttggtctgaacgggactctgacgggtcag
tcattcaagctgtcagaccctcccacccagaaactgatagaggagtggaaccagttctat
cccataagccccagctctaaagacaaggacaaaaattactctccatcggaggacaagatg
gagtacatggactgggaggatgactcgctggccgctgtagaggtcctcgttggtggtgtg
aggatggtgtacccagcctgcctggtgctggtgccccagtctgacatcccggccgtggtc
ccccaggggtcctcgcactgcaccgccatctattctggtggccaccaagtgcctgcatcc
caacgagaccctgccatctcctcagtcaccctcacgcccccaacctcacccgaggatgcc
catacaggtacaatgatggactcccagtcggctctgaagtgggtgaagatgtcgtcggct
gtggacggcttcagtgtggacagcaccagtcaccacgagttgaagatccctcgcaggcta
gccagccaggtggtggagagggtctggcaggagtgcaatatcaacagagctcagaacaag
cgtaagttctcagcgacagccaacggtacctgtgaggaggagctgatggagaaagtaggg
gcctgggactttgtagaatcaacacacaggtcaaactgcaactgctccaggcataaagcc
ctgaaacagcgaggtggttgtaccccgggccagccccagtcagcaggccagccccagtca
gcaggccagccccagtcagcaggccagcccacccacacccagccacccaccaagcacaag
actggaggtgacaagccagagaagagcgacaagcagaccaagaggccacagacacccttc
caccaccgcagcgccgcctgcgatgatgttaccatggagacgaaggcggcaggccagagg
cttgccatgagggcccagcaggaggggggtcgcttccctggcctccaccctaccgacggt
gtcaccaagaccccccagcggcacgacggaggggtgggtagtgccggtggttcctcagag
atgacaggttcccctcagccccctcccctcagcccccacccctgtgagcgcgacagagga
gaggagatgggtgacggctctttaaagaacccctccaccccccacagccaacacttctac
cagccacccccggagccctgcctggcggaacagaagggtggcgtcggggaccaccatgga
ctggatggcctggcacagcacttccaccaccaccacacggcctacccacccgagcccctg
gagcccactgtgtacgtaagctctgcagtcaacctggaggaggatggctccccagcgcca
tggaggttcttcaacctgcccaggaggaaagaggccgcaataccaacgccaacgctgcct
tgggacaagctgagggacagggagagagacgaggcctcgggaggacaggaggtagtgtct
gtcactgagctgatggccacatctaagcggcctctgaaggtgtcggaggagcgcgtgcag
atgtacattcagcggaggaaccagtacctggctgccgccatcaccgacgacgaccacgag
cctgaggtagacccgtacgccttcgaggacggggacgtcaagttctccttctccgacaag
aaggacaagacgggtggcgaacgccagcccgggaagaaacacaagggggaggatggagca
gcaggtccatcagatgacgcagcacgggaagcagcaaacgcacgcactgcgtccactagc
ctaatccacgagaccgacctggccgtgtccatcaacgaccttgacaacctcttcaactcc
gatgaggacgagctcacgcctggttccagacgtgcggtgaatggaacagataatacatct
ggcaccaaggaaccaaagccagcccctctggacccagtctcctgcatcagctcggcagac
ctgcaccagatgttccccactccccccagcctggaacagcacatcatgggctactccccc
atgaacatgggcagtaaggaatacggcgccatcgaggctggacatggcatgaccaacctg
gacggtgcctcgtcccttgggggacactacaagattgaagtggaggagggctactgcagc
cccaagccacaggaaatcaaggacttctcgtttgtatacaagccggagctgtgccaggca
tttgtgggctgctccatgtttgcccccatgaagaccctgcccagccagtgtctgcccccc
atcaagctgccagaggagtgcatctacaggcccagctggacaacagtgggcaaactggaa
atgctcaaccacccccatgtgccttccatggcctacctcaacaaagacagtaacatcccc
agtgtgggcagtgccatggaccaggactacagccagagttacacaccccagacccatact
cccttcatgtccaacagtgccccccccagcaacagtggcacgggcatcctgccctcaccg
gccaccccgcgcttctccgcccccacaccacgcactccccgtaccccacgcacccccaga
gggcccgccagtgtccagggctcgcttaagtatgagaactcggacctctactcgcctgcc
tccaccccctccacctgtcgacccctcaactcagtggaacctgccactgtgccctccatc
cccgaggcccacagcctctacgtcaccctcatcctctctgagtccgtcatgaacctcttt
aaggactgcaacttcgacagctgctgcatctgcgtgtgcaacatgaacatcaagggggcc
gacgtgggggtgtacctgagcgaccccacgggagaggcccagtacccctgcacctgcggc
ttcagcgctgtggtcaaccgccgctatggcaacggctcgggcctcttcctggaggacgag
ctggacatcatcggacgcgactcggacgtcagccgcgaggcggagaagcgctttgaggca
ctgcggcaacactcgctggagaggacagggggaggagggaggggggagagggtaccagac
gaactgatcttactgctacaggaccagtgcaccaaccccttctctcccatggctgggatg
gagcctgacagcctggcagcgcgggggcccgtgggttgtccagtgccggcctgtgtgagg
gtggaggagagggactaccacagtgactgctacatggctctggagcacggccgccagttc
atggacaacatgtcaggaggaaaggtggatgaggccctggtcaagagtacttgtctacac
cactggtccaaacaaaacgcggtggacatcagtgctctgtgctctcaggacgtgctgcgg
gtgctgctctccctccagcctgtactccaggacgccatccagaagaagaggacggtgcgc
tcctggggcgttcagggacccctcacctggcagcagttccacaagatggctggacggggc
tcctacggcacagatgagtctccagagcccctgccgatccctaccttcctggtgggttat
gagtatgactttgtggtgctgtcgcccttcggcctgccctactgggagaagctgctgctg
gacccctttggctcccacagggacgtgggctacctggtggtctgtcccgacaacgaggcc
ctgctccagggggctaagagcttcttcagggacctcaccgccgtctacgagtcatgtcgt
ctgggccagcaccagccaatctcaaaaggtcacccggacggcatcgtgagagtgggcgga
tcggctgctaagaagctagcggagcagcccgtcagcgattggttcatcaaggctgccagc
agcaacagcgatgccttcgccaaactcaagctctatgcacaagtctgtcgccacgacctc
gctccatacctcgccgcacagcctttagacagctccctcctcacacagcccacgccccct
cctgccaccaaccaatcctcatccacacaatcctctggctcctcctccaccacctctgct
tgcccccaaaactcagcgaccccctccctccccaacaacaacagcagcagcgtgcctagt
aacaacactggtgtagccaacagtgccaacagcacggcgtcgtcagggagccagcccagc
tccttccctccctttgggaccatgagcatgcagaaccagggccagggtggtggcacccag
ggagggcagctgggccaacaggctggagcccagaacgcaggcctcaccggggtggactca
gccagccaggcccagtcacccactgaaccccttgagagcaccatggagcgagagaaggtg
ggtgtgccgacggatggagaatctcatgccataacgtaccccccggccatcgtggtatac
atcgtggaccccttcacctatgaggagcctgaggcggggtccagtgtgtggaccctgggc
ctgctgcgctgctacctggagatgcttcagttcctcccaccacacatccgcaactctgtc
tctgtacagatcatcccgtgccagtacctgctccagccggtgaggagcgaggagcgtcat
atctacgctcagcacctcaagtccctggccttctcagtgttctcccagtgcaggcgaccc
ctccccagatccaccaacgtcaagtcgctgactggcttcggccccggactggccatcaac
accgcactgaagagcccagagagaccagagtgtttgcggctctacacgcctcctttcatc
ctggcacccaccaaggacaagcagactgagctgggggagacgttcggggaggcctctcag
aagtacaacgtgctgtttgtgggctactgcctgtcccacgaccagcgctggctcctggcc
acctgcaccgacctgtacggagagctgctggagacctgcatcatcagcatcgacgtgccc
aacagagcgcggaggaaaaaaggctctgcccggaggtcgggcctgcagaagctgtgggat
tggtgcttggggctggtgcagatgacatctgtgccatggagggtggtgataggtcgcttg
ggccgaatgggacacggcgagttgagagactggagtattctgctgagcaggaggaacctg
cagtctctaagtcgccgtctcaaggagatgtgtcgtatgtgtggcatctctgcctccgac
actcccagcatccttagcgcctgtctggtcgccatggagccacagtgctcttttgtcatc
atgccagactctgtgtctacaggctcagtgttcggccgcagcaccactctgaacatgcag
acgtcccagctgagtactccccaggacacgtcctgcacacacatcctggtgttccccact
tcagccttcgtccaggtggccagctccaactacactactgacaccaacatagacatcgcc
ttcaaccctatccccgatgggtcggacgccatcgggatctttgacctgctggatcaggag
aacgagctggtggaccctgacatcatcaacatcctgccctcctcgcccaccacctcaccc
gtacactcccccggcggccactaccaccaggggggagacggcagcaagggccagagtacg
gatcggatggaatcccatgatgaagctcctaacatcctgcagcagcccctggccctgggc
tactttgtgtccacagctaaagccggcgcactgcctgactggttctggtcagcctgccct
caagctcagaaccagtgtcctcttttcctcaaggcctctctgcacctccacgtgtcttca
gtgcaatcagatgaactgctgcacagcaaacactcccatccccttgactccaatcagacc
tcggacgtactcagatttgtgctggagcagtacaatgccctctcttggctgacgtgtgac
cccgcaacgcaggaccggcgctcctgtctgcccatccactttgtggtgctcaaccagatg
tacaacttcatcatgaacatgttgtaa
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