KEGG   Oncorhynchus tshawytscha (Chinook salmon): 112228643
Entry
112228643         CDS       T05605                                 
Symbol
zgc:110224
Name
(RefSeq) DNA repair protein XRCC1 isoform X1
  KO
K10803  DNA-repair protein XRCC1
Organism
otw  Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:otw00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    112228643 (zgc:110224)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:otw03400]
    112228643 (zgc:110224)
DNA repair and recombination proteins [BR:otw03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Short Patch-BER factors
     112228643 (zgc:110224)
SSDB
Motif
Pfam: XRCC1_N zf-C2HC_2 IBR_1
Other DBs
NCBI-GeneID: 112228643
NCBI-ProteinID: XP_024249896
LinkDB
Position
LG30:complement(17470066..17475298)
AA seq 452 aa
MAPVKIKHVVSFTSQDPKNCVENLCVVGGDSRSWLCNPQDRSGVLRAELQLERASYFGYI
DVGNCGSAFIQIDVGRSSWPLDQPYITLLPTATLMSPAESRQGTGLTGVRMFKKGDFLSE
GAEDSWDRVRVTCTQPFNKRSQFGLSFLRIRSPLEESEEGSTQTCKENHGQTTPDKSASG
VREWLSSPAVQRTFFGGAKGEGVVLSRTARMVLTASQAARRSLSLPATSLSPSHTSSSGT
QNTATSSPPTAKPDATTHIPNQGKPGAHTATHNKGKPVGNMGNIHPHTASMACLSTVRSS
KENTSQRQLKRKPNSKSRQNQLNGTTSSKHGKPAVCKRPIATLQHTATAPHPHPSPEPQD
TGDLETTCPICGVFFTAEYLPLHAASCQQVETRKLPGGIVTPVPRPFPVSPASLEESMVP
CPLCSFKFPLSHIQMHASTCGDPVDPHVIWVD
NT seq 1359 nt   +upstreamnt  +downstreamnt
atggccccagtgaaaattaaacacgtcgtttcattcacgtcacaggaccccaagaactgt
gtggagaacctatgtgttgtgggtggagacagcaggtcgtggctgtgcaacccccaagac
cgaagtggagtcctcagagcagaactgcagctggagcgagcctcatactttggatacatc
gatgtggggaactgtggatctgcgttcattcagattgatgtcggccggtcctcttggccc
ctggaccagccctatatcaccctgttgccaacagcaacactgatgagtccagcagaatcg
cgacagggcactgggctgacaggagtgagaatgttcaagaaaggtgatttcctgtcagaa
ggtgcagaggacagctgggaccgggtgagagtaacctgcacccagccttttaacaagcgc
tctcagtttggcctgtccttcctgcgcatccgcagccccctggaggagagcgaggagggc
tccacacagacttgcaaagagaaccatggtcagacaaccccagacaaatcagcatcaggt
gtgagagaatggctgtcgagccctgctgtgcagagaaccttctttgggggagcgaaaggg
gagggtgtggttctgagccggacagctcgtatggtcctcacagcgtcccaggctgccagg
cgttctctttcccttcctgccacttccttgtctcccagtcacacatcatcctctggcact
cagaatacagcaacctcttcccctcccacagccaagccagatgcaactactcatatcccc
aaccagggaaagccaggggctcatacagctacacacaacaaaggcaagccagttggaaat
atgggaaatatacaccctcacacagcttcaatggcttgtttaagcacagttcgcagttcc
aaggaaaatacttctcaaagacagctgaagagaaaaccaaactccaaaagcaggcagaac
cagctgaatggcaccacctctagtaagcacggaaaacctgcagtctgtaagaggccaata
gctactctacaacacactgccacagcccctcatcctcacccatctccagagcctcaggac
actggtgaccttgagaccacatgcccaatatgtggagtgttctttactgcagagtacctg
ccgctccacgccgcctcctgccagcaggtggagaccaggaagctccctggggggattgtg
acccctgttccacgccccttccctgtctctcccgccagcctagaggagtccatggtgccc
tgccctctctgctccttcaagttccctctgtcccacatccagatgcacgccagcacctgt
ggagaccccgtggacccccatgttatctgggtggactag

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