Oncorhynchus tshawytscha (Chinook salmon): 112228664
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Entry
112228664 CDS
T05605
Name
(RefSeq) cohesin subunit SA-2 isoform X1
KO
K06671
cohesin complex subunit SA-1/2
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04110
Cell cycle
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
112228664
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
otw03036
]
112228664
Chromosome and associated proteins [BR:
otw03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Cohesin complex
112228664
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
HEAT_SCC3-SA
STAG
SCD
Motif
Other DBs
NCBI-GeneID:
112228664
NCBI-ProteinID:
XP_024249950
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All DBs
Position
LG30:16913544..16934915
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AA seq
1271 aa
AA seq
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MIAAQELHTEFQFPQEADTQLSSDTDLEDPDVKNAKLGKGKAGKKGKKAPGEKGKGGAAK
GAGLGRVNGHHQENGMENMTLFEVVKMGKSATQSVVDDWIESYKNDRDIALLDLINFFIQ
CSGCKGAVSAEMFRHMQNSEIIRKMTEEFDEDSGDYPLTMAGPLWKKFKSSFCEFIGVLV
RQCQYSIIYDEYMMDTVISLLTGLSDSQVRAFRHTSTLAAMKLMTALVNVALNLSINMDN
TQRQYEAERNKVMAKRANDRLELLLQKRKELQENQDEIENMMNAIFKGVFVHRYRDAIAE
IRAICIEEIGVWMKMYSDAFLNDSYLKYVGWTMHDKQGEVRLKCLTALQGLYYNRELNTR
LELFTSRFKDRIVSMTLDKEYDVAVQAIKLLTLVLHSSDEVLTAEDCESVYHLVYSAHRP
VAVAAGEFLYKKLFSHRGPEEEGMPRRGRQSVNGNLIKTTVFFFLESELHEHGAYLVDSL
WECAGELLKDWESMISLLLDEPMPGEEALTDHQETALIEIMLCAIRQACECHPPVGRGTG
KRVLTAKEKKTQLDDRTRITEIFAVALPLLLAKYSVDAEKVTNLLQLPQFFDLEIYTTGR
LEKHLESLLRQIREVVEKHTETDVLEACSMTYHALCNEEFTIFNRVDIARSQLLDELVDK
FNRLLEDFLQEGEEPDEDDAYQVLSTLKRITAFHNAHDLSKWDLFTSNYKLLNTGLQNGD
MPEQIVIHAMQCTHYVILWHLAKVSEGSSTKADMVTLRKQMRGFCLMCQSYLTSVNTTVK
EQAFTILCDALMIFSHQIVSSSREQLEALIYTPDSSLQAELLNFILDHVFIDQDDDNNST
DGQHDDEASKIEALHKRRNLLAAYCKLIIYNVVEMNTGADIFKQYMRYYNDYGDIIKETM
SKTRQIDKIQCAKTLILSLQQLFNEMLSDLGCNFDRSSSSFCGIKELARRFSLTFGLDQL
KTREAIAMLHKDGIEFAFKEPSPQGEGNPPLNLAFLDILSEFSSKLLRQDKKTVHLYLER
FMTFQMALQREDCWLPLISYRNSLQAGGDDDTMSVISGYSSRGSSIRSKKAKPASTGKRK
LPEEESSSCSTDAVWMNREQNVQTPVMMPSPHLSSTVLRDPKKMRPEESYMGVYSITSEQ
QQQPLPPQQQHHQTPMDYNTQVTWMLAQRQQAEARQQQERASMQYAKMRSHMQHAIRRSS
GLMEDDEEPIVEDVMMSSEDRLEDLNEGMDFDTMDIDLPPSKNRRERSELKPDYFDPSSI
MDDSVLNVSMF
NT seq
3816 nt
NT seq
+upstream
nt +downstream
nt
atgatagcagcacaggagttgcacacagagtttcagtttcctcaggaggctgatacacag
ttgtcctctgacacagaccttgaggaccctgatgtcaaaaatgctaagcttgggaaagga
aaggcgggtaagaaggggaagaaagcccctggagagaagggaaagggtggtgcagcgaag
ggtgctggccttggccgggtgaatggtcaccaccaggagaatgggatggagaacatgacc
ctgttcgaggtggtgaaaatggggaagagtgccacgcagtctgtcgttgatgactggatt
gagtcttacaagaacgatcgagacattgcactcctggacttgatcaacttcttcatccag
tgctccggctgtaaaggtgctgtcagtgcagagatgttcaggcacatgcaaaactctgaa
ataatcaggaagatgactgaggagtttgacgaggacagcggggactacccgttaaccatg
gcagggccactgtggaagaagttcaagtcgagcttctgtgagtttatcggggtgctggtg
cggcagtgtcagtacagcatcatctatgatgagtacatgatggacacggttatctcgctg
ctcacgggcctgtctgactctcaggtccgagccttcagacacaccagcaccctggcagcc
atgaagttgatgaccgccttggtgaacgtggctctgaacctgagcatcaacatggacaac
actcagaggcagtacgaggcagagaggaacaaggtcatggccaagagggccaatgatagg
ctggagctccttttacagaagcgtaaagagcttcaagaaaatcaagacgaaattgaaaac
atgatgaatgcgattttcaaaggagtgtttgttcacagatatcgtgatgccatagctgaa
atccgtgcaatttgcattgaggagattggggtatggatgaagatgtacagtgatgctttt
ctcaatgacagttatctgaagtatgtcggatggaccatgcatgacaagcaaggtgaagtg
cgtctcaagtgtctgactgcgctccagggcctgtactataaccgggagctcaacactcgg
ctggagcttttcaccagccgcttcaaggaccgcattgtgtcgatgactctggataaggag
tatgatgttgcagtgcaagccataaaacttctgactcttgtcttgcatagcagtgatgag
gtcctgacagcagaggactgtgagagtgtctaccatctggtctactctgctcatcgacct
gtggctgtggctgcaggagagttcctctataagaagcttttcagccatcgaggtccagag
gaggaagggatgcccaggaggggcaggcagagcgtcaacgggaacctcatcaagaccacc
gtcttcttcttcctggagagtgagctccatgagcacggggcctacctggtggacagtctg
tgggagtgtgcaggggagctgctaaaagactgggagagcatgatcagcctgctgctggat
gagcccatgccaggggaggaggccctgactgaccaccaggagactgctctgatagagatc
atgctgtgtgccatccgccaggcctgtgagtgccaccctccagtgggcagaggcacaggg
aagagggtcttgacagcgaaggagaagaaaacccagctggatgaccggacgagaatcact
gagattttcgctgtggcgttgcctctgttgttggctaagtactctgttgatgctgagaag
gtgaccaacttactgcagctgccgcagttctttgacctggaaatctacaccactggtcga
ttggaaaagcacttggagtcgttgctgcgtcagatcagggaggtggtggagaagcacaca
gagactgacgtgctggaggcgtgctccatgacctaccacgctctctgcaacgaggagttc
accatcttcaacagggtggacattgccaggtcccagctactggatgagctggtggacaag
ttcaacagactcctggaggacttcctacaagagggtgaggaaccagatgaggatgatgcc
taccaggtcctgtccacactgaagaggatcactgcgttccacaatgcgcatgacctctct
aaatgggacctgttcaccagcaactataagctattaaacacaggacttcagaatggtgat
atgcctgagcagattgtcattcatgcgatgcagtgcacacactatgttatcctgtggcac
ctagccaaggtttcagagggcagctccacaaaggcggacatggtgaccctgaggaagcag
atgaggggtttctgtctgatgtgccagagctacctcaccagtgtcaacaccaccgtcaaa
gagcaggccttcaccatcctgtgtgacgccctgatgatcttcagccaccagattgtgtcg
tcgagccgggagcagctggaggctctgatctacacgccagactcctctctgcaggccgag
ctgctcaacttcatcctggaccacgtcttcatcgaccaggacgacgacaacaacagcaca
gatgggcagcatgatgatgaagccagtaaaatcgaggctttacacaagaggcggaacctg
ctggcagcgtactgcaaactgatcatttacaatgtagtggagatgaacactggagctgat
atcttcaagcagtacatgaggtactacaacgactatggagatatcatcaaggaaacgatg
agtaaaacaagacaaattgacaagatccagtgtgccaagaccctcattctgagtttgcag
cagcttttcaatgagatgttatctgacctcggctgcaactttgaccgctcgtcgtcgtcc
ttctgcggcattaaagaactggcccgacgtttctcgttgacctttggcctggatcagctg
aagaccagagaggctatcgccatgttacacaaggatggaatcgagtttgccttcaaggag
cccagtccccagggagagggaaaccctcctctcaacctagccttcctggacattctcagc
gagttctcctctaaactgctgcgtcaggacaagaagactgttcacctctacctggagcgg
tttatgaccttccagatggccttgcagcgagaggactgctggctgcccctcatctcctac
aggaactccctgcaggccggaggggacgacgacaccatgtccgtcatcagtggctacagc
agccgaggttccagcatcaggagcaagaaggctaagccagccagcaccgggaagaggaaa
ctgcctgaagaggagagtagcagctgcagtacagacgctgtgtggatgaaccgggagcag
aatgtgcaaacgccagtgatgatgccctcgccgcatctcagctccactgtgttgagggac
cccaagaaaatgaggccggaggagagttacatgggcgtctacagcataacatccgagcag
cagcaacaaccgctgcccccccagcagcagcaccatcagacccccatggactacaatacc
caggtgacctggatgctagcccagagacagcaggcagaggcccggcagcagcaggagcga
gccagcatgcagtatgccaagatgagaagccacatgcagcatgcaatccgccgcagttca
ggactcatggaggacgatgaggagccaatagtagaggatgtaatgatgtcatcagaggac
cgtttggaagatctcaacgagggcatggatttcgacactatggatattgatctgccacca
tcgaaaaatcgtagggagagatcggagctgaagcctgactactttgacccttcttccatc
atggatgattcggtcctcaatgtttcaatgttctaa
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