Oncorhynchus tshawytscha (Chinook salmon): 112229018
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Entry
112229018 CDS
T05605
Name
(RefSeq) transcription elongation factor SPT6 isoform X1
KO
K11292
transcription elongation factor SPT6
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
otw03021
]
112229018
03036 Chromosome and associated proteins [BR:
otw03036
]
112229018
Transcription machinery [BR:
otw03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
112229018
Chromosome and associated proteins [BR:
otw03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
112229018
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SH2_2
YqgF
HHH_7
HTH_44
Tex_central_region
SPT6_acidic
Spt6_S1
S1
S1_RRP5
HHH_9
HHH_3
SH2
Tex_N
Tex_YqgF
Motif
Other DBs
NCBI-GeneID:
112229018
NCBI-ProteinID:
XP_024250658
LinkDB
All DBs
Position
LG30:1934629..1985603
Genome browser
AA seq
1753 aa
AA seq
DB search
MSDFIDSEAEESEEEFEEKDLKPKKTQAFMDDEEEEEELNTEDQDEHGNLRGLIDDDDDV
DEDEEAEEKKSGGASSGSDSEDEVRHRRKKRNYDDYLDDDDLDLIEENLGVKVKRRKKKY
DRVKLMDDDEDDEKDQIADEIFHGGDGEGELEEGETVDPPLHRHGERHDEEEEEEGEEES
DIDDFIVDDDGQPITKKRGKFSGYTDAALQEAQEIFGGDFDFAEFDADGAYDQGEEEEED
QDEEGWDRPKKQTKRRVGRKSIFEIYEPSELESSHMTDQDNEIRSTDMPERFQLRSIPVK
PAEDNELEEEAEWIYRNAFSTPTISMQESTDYLDRGTTTNLSRKGPSTIAKIKEALNFMR
NQHFEVPFIAFYRKEYVEPELNINDLWKVWQWDEKWCQLKSRKQNLTRLFRRMQSHQYEQ
ISADPDKPLADGIRPLDTADMERLKDVQSIDELSDVYSHFLLYYGRDIPKMQNTAKAASK
KKTLRKIKEVNEDGEEEEVEVEEEEEQKGPDLKLASRRDMYSICQSAGLDGLAKKFGLTP
EQFGENLRDSYQRHETEQFPAEPVELAKDYVCSQFNSPEAVLEGTRYMVAMQISREPLVR
HVLRQTFQERAKININPTKKGKKDMDEAHFGYSFKYLKNKPVKELNGEQFLKMCQAEEEG
LLTIDICIDLLGVKGFAGDQTYFDEIKQFYYRDEFSHQVQEWNRQRTLAIERSLTQFLYP
QMAKELKNKLIAEAKDNIIKSCCRRLYNWLKVAPYRPDQQQAEEEDDDLMDESQGKGIRV
LGVAFADSRDTPVFCSLINGEGEVVDFLRLPYFLKRRNAWREDERDKKLQDIENLKKFLI
SKKPHVVAVAGENRDAHMIMEDIKRTVSELEQESSLPAVGVELVDNELAMLYMNSTKSQT
DFRDYPPLLRQAVSVARKIQDPMVEYAQVCSTDEDILCLKLHPLQEHVVKEDLLNALYCE
FINRVNEVGVDVNRAISHPYTQSLVQFVCGLGQRKGSHLLKILKQNNTRLENRTQLVTMC
HMGPKVFINCAGFIKIDTASLGDSTDSYIEVLDGSRVHPETYEWARKMAVDALEYDESAE
DANPAGALEEILENPERLKDLDLDAFAEELERQGYGNKGITLYDIRAELSCRYKDLRVPY
RAPNTEEVFNLLTKETPETFYIGKLITSVVTGIAHRRPQGESYDQAIRNDSTGLWQCPFC
QQDNFPELSEVWNHFDSGSCPGQAIGVRSRMDNGVQGFIPTKFLSDKVVKHPEERVKVGM
TVHCRIMKIDIEKFNVDLTCRTSDLMDKNNEWKLPKDTYYDFDAETEDTKAEEELKKKQQ
RTTYIKRVIAHPSFHNINFKQAEKMMESMDQGDVVIRPSSKGENHLTVTWKVADGIYQHV
DVREEGKENAFSLGHTLWIYTEEFEDLDEITARYIQPMAAFARDLLGHKYFQDCNGGDKK
KMEELLIRCKKEKPAFIPYFVSACKDLPGKFILGYQPRGKPRVEFVTISPDGFRYRSQMF
PTVNGLFRWFKDHFQEPVPGITPSSSSRTRTPASVNATPANINIADLTRAVNALPRNMTS
QMFSAIAAVTGQGQGQNANTTPAQWGSSQYGYTGGSSGGGGRNSSAYHVFATPQQPMSTP
MMTPSYSYTTPSQQTMGTPQYPSSTPLSSHGHTQSSQGQGHSSSNSHHGHSSNTPSSSST
SSRGRTPQQPKSSVSTAVDWAKMAEQWLQDKEAERKKQKTPRMTPRPSPSPMIESTPMSI
AGDATPLLDEMDR
NT seq
5262 nt
NT seq
+upstream
nt +downstream
nt
atgtctgacttcatcgacagcgaggctgaggagtcagaggaggaatttgaggagaaagac
ctgaagcccaaaaagacccaggcgtttatggatgatgaggaagaggaggaagagttaaac
acagaggaccaggatgagcacgggaacctgagggggctcatcgatgatgatgatgatgtg
gatgaagatgaagaagcggaagaaaagaagagcggaggagcgagtagcggcagcgactca
gaggatgaagtcagacacaggcgcaaaaaacgcaactatgatgactacctggatgatgat
gacctggacctcattgaggagaacttgggggtcaaagtcaagaggaggaagaagaagtat
gaccgcgtgaagctgatggatgatgatgaagatgacgaaaaggaccagattgcagacgag
atcttccacggaggagacggagagggggagctggaggagggagagaccgtcgaccctccc
ctccatcgccatggtgaacgccacgatgaagaggaggaagaggaaggagaggaggagtca
gatattgacgactttattgtggatgacgatggccaacccatcacaaagaagagaggcaag
ttctcaggatacacggacgcagccctccaggaggcccaggagatcttcggcggtgacttt
gactttgcagagtttgatgctgacggagcatatgaccagggtgaggaagaggaggaggac
caggacgaagagggctgggaccggcccaagaagcagacgaagaggagagtggggaggaag
agcatcttcgagatctatgagcccagcgagctggagagtagtcacatgacagaccaggac
aacgagatccgctccaccgacatgccagagaggttccagctgcgctccatcccagtgaag
cctgctgaggataatgagttggaggaagaggcagagtggatctacagaaatgccttctca
acccccaccatctccatgcaggagagtacagactacctggacagagggaccaccacaaac
ctcagcaggaaaggccccagcaccatcgctaagatcaaggaggccctcaacttcatgagg
aaccagcactttgaggttccgttcatcgcattctacaggaaggagtatgtagaaccggag
ctcaacatcaacgacctgtggaaggtctggcaatgggacgagaagtggtgccagctgaag
agcaggaagcagaacctgacacgactgttccggaggatgcagtcgcaccagtatgaacag
atctctgccgaccctgacaaacccctggctgatggcatcagacccctggacacggctgat
atggagagactgaaagacgtccagtccatagatgagctgagtgatgtgtacagccacttc
ctgctgtactacggcagagacatccccaagatgcaaaacacagccaaggccgccagtaag
aagaagacgctgaggaagatcaaggaggttaacgaggacggtgaggaggaagaggtggag
gtggaggaggaggaagagcagaaggggccagacctgaagctggcatctcgtagagacatg
tacagcatctgtcagagcgcagggctcgacggcctggctaagaagtttggtctgactcca
gagcagtttggggagaatctgagagacagctaccagcgccacgagacagagcagttccct
gctgagcctgtagagctggccaaagactacgtctgcagccagtttaacagtcctgaggcg
gtgttggaggggactcgttatatggtggccatgcagatttccagggagcctctggtcaga
cacgtcctcagacagaccttccaggagagagccaagatcaatatcaatcccaccaagaaa
ggaaagaaggatatggatgaggcccattttggctactccttcaagtacttgaaaaacaag
ccagtgaaggagctgaacggagaacagtttttaaagatgtgccaggctgaggaggaggga
cttctcaccattgacatctgcatcgacctcctaggggtcaaagggtttgcaggtgaccag
acgtactttgatgagatcaagcaattctattacagagatgagttcagccaccaggtgcag
gagtggaacagacagaggacactggccatcgaacgctccctcacacagttcctctaccct
cagatggccaaggaactcaagaacaaactcatcgcagaggccaaggacaacatcatcaag
tcgtgttgcaggaggctgtataactggctgaaggtggctccctacagaccagaccagcag
caggcggaggaggaggatgatgatctgatggatgagagtcaaggaaaaggcatcagagtc
ctgggagtggcctttgcagacagcagagacacgccagtgttctgttctctgatcaacgga
gagggagaggtggtggacttcctccgtctgccttacttcctgaagaggaggaatgcatgg
agggaggacgagagggacaaaaagctccaggacattgagaacctaaagaagttcctgatc
agtaagaaacctcacgtggtggctgttgccggggagaatagagatgcccacatgataatg
gaggacattaagaggacagtgagtgagttggagcaggagtcttctctgcctgctgtggga
gtggagctggtggacaacgaactggccatgctttacatgaacagcacgaagtctcagact
gacttcagggactaccctccgctgctgcgccaggccgtgtccgtagccaggaagattcag
gatcccatggtggagtacgcgcaggtctgcagcacagacgaagacatcctctgcctcaaa
ctacaccctcttcaggagcatgtagtaaaggaggacctgctgaatgctctgtactgtgag
tttataaaccgggtcaacgaggtgggggtggatgtgaacagggccatatctcacccctac
acacagagcctggtccagttcgtctgtggcctcggacaaaggaagggatcgcacctgctc
aagatcctaaaacagaacaacactcgtttggagaacaggactcagctggtcaccatgtgt
cacatgggccccaaggtcttcatcaactgtgccggcttcatcaagatagacaccgcctcg
ctcggagacagtacggactcatacatcgaggttctggacgggtccagggtgcacccggag
acgtatgagtgggccagaaagatggcggtggacgctctggaatacgacgagtctgcggag
gacgccaacccggccggtgcgctagaggaaatcctggaaaacccggagcgactcaaagac
ctggatcttgatgccttcgctgaggagctagagagacagggttacggtaacaagggcata
acgctgtatgatatccgtgctgagttgagctgcaggtataaggacctgagagttccctac
agagctcctaacaccgaggaggtgtttaacctgctcaccaaggagacacctgagaccttc
tatataggtaagctgatcaccagcgtcgtgacaggcattgctcaccggcgcccacaaggg
gagagttatgaccaggccatcaggaacgactctaccgggctgtggcagtgccccttctgt
caacaggacaacttccccgaactcagcgaggtgtggaaccattttgacagtggatcatgt
ccgggccaggccatcggtgtgaggtctcgaatggacaatggggtccagggcttcatcccc
accaagttcctcagtgacaaggtggtcaagcaccctgaggagagggtcaaggtgggtatg
accgtacactgtcgcatcatgaagattgacattgagaagttcaacgtggacctgacgtgt
cgtacgtctgacctgatggataagaacaacgagtggaagcttcctaaggacacctactac
gactttgacgcagagacagaagacactaaggcagaggaggaactcaagaagaaacagcag
agaaccacctatataaagcgtgtgatcgcccatccatcgtttcacaacatcaacttcaag
caggccgagaagatgatggagtccatggaccagggagacgttgtaatcaggcccagcagc
aagggagagaaccacctcactgtcacatggaaggtggctgatggtatctaccagcatgtg
gatgtgagagaggagggcaaggagaacgccttcagtctgggacacacactctggatctac
acagaggagtttgaggatcttgatgagatcacagctcgttatattcagccaatggcagcg
tttgctcgcgacctcctgggacataagtacttccaggactgtaacggcggggataagaag
aaaatggaggagttgttgattaggtgtaaaaaggaaaagcctgcgttcatcccctatttt
gtctcagcctgtaaagacctgccagggaagttcatactggggtaccaacctcgcggaaaa
ccacgtgttgagtttgtgaccatcagtcctgacgggttccgctaccgctcccagatgttc
cccacagttaacggactgttccgctggttcaaagaccactttcaggaaccggtaccaggc
atcacccccagcagtagtagtcgaacacggacacctgcttctgtcaacgctacaccagct
aacatcaacatcgcagacctgacgcgagctgtcaacgctctcccgcggaacatgacctct
cagatgttcagtgccatcgccgcggtgacagggcagggccagggccagaatgccaacacc
acacccgcccagtggggctccagccaatacggttacaccgggggcagcagtgggggtggg
ggacgcaactcctcagcctatcacgtatttgcaacgccccagcagccgatgtcgacgccc
atgatgacccccagctactcatacaccacccccagccagcaaaccatgggtacgccccag
tacccctcctccacccccttgtcctcccacggacacacacagagcagccaagggcagggc
cacagcagcagcaacagtcaccatggacactcgtccaacacaccttcctcctcctccacc
tcttccagaggacgcacgccgcagcagcctaagtcgagcgtcagcacggcggtggactgg
gccaagatggcggagcagtggctccaggacaaggaggcggagaggaagaagcagaagacc
cccaggatgaccccacggccttcccccagtcccatgatcgagagcaccccaatgtccatc
gctggagacgcaacaccccttctggacgagatggaccgatag
DBGET
integrated database retrieval system
