Oncorhynchus tshawytscha (Chinook salmon): 112229029
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Entry
112229029 CDS
T05605
Symbol
cnot6a
Name
(RefSeq) CCR4-NOT transcription complex subunit 6a
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
112229029 (cnot6a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
otw03019
]
112229029 (cnot6a)
Enzymes [BR:
otw01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
112229029 (cnot6a)
Messenger RNA biogenesis [BR:
otw03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
112229029 (cnot6a)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
112229029 (cnot6a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
LRR_8
LRR_14
LRR_4
LRR_1
LRR_LRWD1
LRR_R13L1-DRL21
Motif
Other DBs
NCBI-GeneID:
112229029
NCBI-ProteinID:
XP_024250674
UniProt:
A0AAZ3QUT6
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All DBs
Position
LG30:1224142..1237338
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AA seq
557 aa
AA seq
DB search
MPKEKYDPPDPRRMYTIMSTEEAANGKKSYWAELEISGKVKSLSTSLWKLTHLTALHIGD
NSLSRIPPDIAKLQNLVYLDLSSNKIRSLPAELGNMVSLRELLLNNNQLRVLPFELGKLF
QLQTLGLKGNPLAQEILNLYQEHDGTRKLLNYLLDNLAGTKRVNSEQPPPRSWIVMAEPD
RARTAALFSVMCYNVLCDKYATRQLYGYCPSWALNWEYRKKSIMQEIMNCNADIISLQEV
ETEQYYNYFLPELKDQGYEGFFSPKSRARTMSECDRKHVDGCAIFYRTEKFSLVQKHTVE
FNQLAMANSEGSEAMLNRVMTKDNIGVAALLEVRKEMMEQSVGKSLHGMEKQLLLVANAH
MHWDPAYSDVKVVQTVMFLSEVKNIVEKATRSLKLSSVSGETNAVPLVLCADLNSLPDSG
VVEYLSSGGVDSTHKDFKELRYIDSLTNFNCNGKNGTSNGRITHSFKLKSAYENGLMPYT
NYTFDFKGIIDYIFYSQPTLNVLGVLGPLDPHWLHENNISGCPHPHIPSDHFSLFAQLEL
LLSYPSSVNGIHLPGRR
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgcccaaggaaaaatatgatccgccagacccaaggcggatgtacacaataatgtccact
gaggaggcagccaatgggaagaagtcatactgggctgagctcgaaattagtggtaaagtg
aagagtctgagcacctcattatggaagttgactcacctcactgctcttcacatcggagat
aactccctctctcgtatcccgcctgatattgccaaacttcaaaacctggtgtacctggac
ctctcatccaacaagatcaggagcctgcccgccgagcttggcaacatggtgtctctcagg
gaacttcttttaaacaataaccagttgcgggttctaccttttgagcttggaaaactgttt
cagttacaaacactggggttaaaaggaaacccacttgcacaagaaatattgaacctctat
caggagcatgatggcacgaggaaactgctcaactaccttctggacaatctggcagggacc
aaacgagtcaactccgagcaacccccacccagatcatggattgtcatggccgagcctgac
cgggcacgaacagcagccttgttttctgtgatgtgctacaacgtgttgtgtgataagtat
gccacgcgccagctctacggctactgcccctcctgggcccttaactgggagtacaggaag
aagtccatcatgcaggagatcatgaattgcaacgctgacatcattagcctacaggaagtg
gaaacagagcagtactacaactacttcctaccggagctgaaggaccagggttatgagggc
tttttcagccccaagtcccgcgccaggaccatgtctgagtgtgaccgcaagcatgtggac
ggctgcgccatattttacagaaccgaaaagttcagcctggtgcagaaacacacggtggag
ttcaaccagctggctatggcaaactctgagggctcagaggccatgctcaacagagtcatg
accaaggacaacattggtgtggccgctcttctagaggtgcgcaaggagatgatggagcag
tctgtgggaaagtctctgcacggcatggagaaacagctcctcctggtggccaatgcccac
atgcactgggacccggcgtactccgatgtcaaggtggtccagaccgtcatgttcctgtct
gaggtgaaaaacatagtggagaaggccacgcgcagcctcaagctctcctcagtctccggg
gagactaatgccgtcccactcgtcctgtgtgctgacctcaactcactccccgactctggt
gtggtggagtacctgagctcgggcggagtggacagcacccacaaggacttcaaggagctt
cgctacatcgacagcctgaccaacttcaactgcaacggcaagaatggcacatccaacggc
aggatcacccacagcttcaagctgaagagtgcctacgaaaacggcctgatgccttacacc
aactacaccttcgacttcaagggcatcattgactacatcttctactctcagcctacgctc
aatgtgttgggagttctgggtcctctggatcctcactggctccatgagaacaatatcagt
ggctgtccccacccccacatcccctccgatcacttctccctgtttgcacaactggagctg
ctcctctcctacccgtcatcagtcaatggaatccacctgccagggcgcaggtag
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