Oncorhynchus tshawytscha (Chinook salmon): 112229127
Help
Entry
112229127 CDS
T05605
Name
(RefSeq) Down syndrome cell adhesion molecule-like protein 1 homolog
KO
K06768
Down syndrome cell adhesion molecule-like protein 1
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
otw04515
]
112229127
Cell adhesion molecules [BR:
otw04515
]
Immunoglobulin superfamily
Other
112229127
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
I-set
Ig_3
fn3
Ig_2
ig
Ig_DSCAM-DSCAML_C
V-set
C2-set_2
Pur_ac_phosph_N
C1-set
Ig_6
Sp38
DUF6034
ChitinaseA_N
DUF1461
Motif
Other DBs
NCBI-GeneID:
112229127
NCBI-ProteinID:
XP_042165595
LinkDB
All DBs
Position
LG30:16460612..16600811
Genome browser
AA seq
2059 aa
AA seq
DB search
MWLVTLLLLYSLQEVHSEDVGSTRLYFVNASLQRLTYSSSVGVSLPCPAGGTPTAILRWY
LATGDDIYDVPHIRHVHANGTLQLYPFSPSAFNSYIHDNDYFCTAENQAGKIRSPNIRVK
AVFREPYTVRVADQRSMRGNVAVFKCLIPTAVQEYVSVVSWERDTVSIIPANRFFLTSFG
ALYISDVQKEDALSTYRCITKHKYSGETRQSNGARLSVMDPTESSPSILDSFLAGEVRAG
LSVELPCIAAGYPSPTVRWLKDGRPLPSDAHWTRRLTGLTISDLRQEDSGSYACEVTNSF
GSKEVSGALYVIDPLRVTLSPKSLKTGISSTLFFTCAVEGSPEYTVAWYRNTDPIIPDQH
ISIQGPHNDTLQITAAQKSHSGAYQCFASRKGHTAQDFSIILLEDGTPRIVSSFSERVVA
PGEPFSLMCGAKGAPPPSITWTLDDEPVVQDSAYKTSQYTLSDGLTVSHVNVSSPAIRDG
GVYRCAARNSAGSAEYQARINVRGSPRIREMRDITAVAGRNTFITCRVIGYPYYSIKWFK
DGMLLPDNHRQVVYENGTLRLSDVQKGMDEGTYLCSVLIQPQTSIDQTVHVTVKVPPLIQ
PFDIPSTSVGKLMYIACVVSSGDMPIRITWHKDGQLIVPGSASGVGIETKEFMSSLQISK
VTLKHNGNYTCIASNAAATVSWERQLIVTVPPRFVVQPNNQDGIYGKAGVLNCSVEGYPP
PKVMWKHAKGIGNPQQYHPVPLTGRIQIMGNGSLLIRHVLEDDRGYYLCQASNGVGSDIS
KSMVLTVKIPAMITSHPNTTMAIKGQVKELNCTARGEQPIIIRWERGDTVIDAERNPRYS
ITINKKGDEVISTLKLKPAERGDSVFFSCHAINSYGEGRGLIQLTVQEPPDPPELEVREV
KDRSMNLRWIQRFDGNSIITSYDIEYKNKSDTWDHKYTTRNISPTNNQANIVELHPACVY
SIRMYSFNKIGRSQPSKELTISTEEAQPDGPPMDVILQPMTSQSIRVTWRAPRKELQNGV
IRGYQIGYRENGPGSNGQYSIVEMKATGDSEVYTLDNLKKFAQYGVVVQAFNRAGTGPSS
TEINATTLEDVPSQPPQNVRAISVTSDEAVITWAEPPRLTLHGVLKGYRVVFWSLFPDGG
GCCGGQAQGPMQKWGEMQNITTTREQVELRGLEKFTNYSVQVLAYTQAGDGVRSNVLYIQ
TREDLPGPPAGIKAVPSSPSSVVVSWLPPHKPNGVIRKYTIYCSSPGSGQPAPSEYETNP
EMLFYRITHLTRGKQYLIWAAAVTTAGRGNISEKVTVEPAGKAPAKILSFGGTVTTPWMK
EICLPCSSVGEPTPTFKWTKDSEYTAIPVTVDGQRQILSNGTLVLRSVKAEDSGYYTCTA
TNTLGFDTIIVNLLVQVPPDQPRLTVSTTSTSSITLAWIPGDNGGSSIRGFVLQYSVDNT
EEWRDVFITSTERSFRLDNLRCGTWYKVKLAAKNSVGSGRISEIIEAKTHGREPAFNKEQ
PLLTHINSTHAGLNLQGWTSGGCPITALLLDFRPKGTWAWQSLKANATAQLFLSELREAT
WYELKMKACNSAGCGNQSSQFATTDYDGSTIPPINSAQEDRDDVKKLFSIGSPVILVTLG
VALLFIIRKKRKEKRLKRLRDAKSLAEMLISKNNRSMDTPVKGPPQGPRLHIDIPRVQLL
IEDKEGIKQIGEDKAVAPVTDSEFSQSVNPQSFCTGVSLHHPALIQNTGPLIDMSDIRPG
TNPVSRKSVKSAHSSRNRYSSQWTLSRPGQSQSTASARTLTSDWRTMGSHGITATESDSY
SASLSQDTDKGRNSMVSTESASSTYEELARAYEHAKLEEHLQHAKFTITECFISDSSSDQ
MTTGTNDPADSMTSLSTPSETGLCRFTASPPKPQDYDRGRPTNVAVPIPHRANKSEFCNL
PLYMKTDPFFRKQAELHDPCPAVPPREASIRSLAQRAYHTQGRHMTLDPSKQQALTLGHS
GLASLGVSSGTATLPQRTLTMPSSNPAATASTSSTSSNPTGSSTKMGGSRDSLLENSSSA
LGRLQKQGVGAYSKSYTLV
NT seq
6180 nt
NT seq
+upstream
nt +downstream
nt
atgtggcttgtaactttactcctgctgtactctctccaggaagtacacagtgaggatgtg
ggctctaccaggctgtactttgtgaacgcgtccctccagaggctgacctactccagctcg
gtgggggtgtctctgccctgtccggcgggcggcacccccaccgccatcctgcgctggtac
ctggccaccggcgatgacatctacgacgtgccccacatccgtcatgtccatgccaatggc
accctccaactctaccccttctctccctccgccttcaactcctacatccacgacaacgac
tacttctgcaccgcagagaaccaggctggcaagatccgcagccccaacatcagagtcaaa
gctgtgttcagggagccgtacacggtgcgggtggcagaccagcgctccatgcggggcaac
gtggccgtgttcaagtgcctcattcccaccgccgtgcaggagtacgtcagcgtggtgtcc
tgggagagagacaccgtttccatcatcccagctaacaggttcttcctgacatcctttggt
gctctgtacatctcagatgtccagaaagaggatgccctctccacctaccgctgcatcacc
aagcacaaatacagtggagagacacgccagagcaatggagccaggctgtctgtcatggac
cccacagagtcgtctccctctatcctggacagtttcctagcgggggaggtgcgggcgggt
ctgagtgtggagcttccctgcattgcagcagggtaccccagccccacagtgcgctggctg
aaggacggccgcccactgccttccgatgcccactggacgcggcgcctcacgggtctgacc
atcagtgacctcaggcaggaggacagcggcagctacgcctgtgaggtcaccaacagcttc
ggctccaaggaggtgtccggagcactttatgtcatagaccccctgcgagtgaccctttct
cccaagagcctaaagacgggcatcagcagtaccctgttctttacctgtgctgtggagggt
tctccagagtacacagtggcctggtacaggaacacagaccctataatcccagatcagcac
atctctatccagggcccccacaacgacaccctgcagatcacagcggctcagaagagccac
tctggggcctaccagtgcttcgcctcccgcaagggccacactgcccaggacttctctatc
atactgctggaggatggtactcctcgtatcgtgtcgtccttcagtgagcgcgtggtcgcc
cccggggagcctttctccctgatgtgtggcgccaaaggagccccacccccttccatcacc
tggacgctggacgacgagcctgtggtgcaagactccgcctacaagacaagccagtacacc
ctatcagacggcctgaccgtgtcacatgtcaacgtcagcagcccggccatccgcgacggg
ggagtgtatcgctgcgccgcacgcaactcggccggtagcgccgagtaccaagcgcgcata
aacgtaagaggttctcctaggatcagggagatgcgtgacatcacggctgtagctggaagg
aacacctttataacctgtcgtgtgattggttacccatactactctatcaagtggtttaag
gacggcatgctgctgcctgacaaccatcggcaggttgtgtatgagaatggaaccctgagg
ctgagtgatgtgcagaagggcatggacgagggtacctacctgtgtagtgtgctcatacag
ccacagacctccatcgaccagactgtccacgtcactgtgaaagtgccgcccctgatccag
ccctttgacatcccttccacgtcggtgggaaagctgatgtacatcgcctgcgtggtgtcg
tcaggtgacatgcctatccgcatcacctggcacaaagatgggcagcttatcgtgcctggc
tccgcctccggcgttggcatagagaccaaggagttcatgagctccctgcagatctccaag
gtgaccctgaagcacaacggcaactacacctgcattgctagcaacgccgcagcaaccgtc
agctgggagagacaactgatcgtcaccgttccccctcgcttcgtggtacagcctaacaac
caggatgggatctatgggaaggcaggagtactcaactgctctgtggagggataccctcct
cccaaagtcatgtggaaacacgccaaaggtatagggaacccccagcagtaccaccctgtg
cctctgactggtcggatccagatcatggggaacggctccctgctgatccgtcacgtcctg
gaggacgaccgaggatactacctctgtcaggcctccaacggagtgggctctgacatcagc
aagagcatggttcttactgtcaagattccagccatgatcacgtcacaccccaacaccacc
atggccatcaagggccaggtgaaggagctgaactgcacagcgcggggcgagcagcccatc
atcatccgctgggagaggggcgacaccgtcatcgacgccgagaggaacccccgctactcc
atcaccatcaacaagaaaggggacgaggtcatctccacgctcaagctgaagccagcggag
cgcggggactcagtcttcttctcctgccacgccatcaactcatacggagaggggcgagga
ctcatccagcttaccgtgcaagagcctcctgaccctcctgagttggaggtgagagaggtg
aaggaccgcagtatgaacctgcgctggatccagaggttcgacggcaacagcatcatcacc
agctacgacatcgagtataagaacaagtctgatacttgggatcacaagtacactaccagg
aacatctcccccactaacaaccaggctaacatcgtggagctgcaccctgcctgtgtctac
agcatccgcatgtactccttcaacaagatcggacgcagccagcctagcaaggagctcacc
atcagcactgaggaagcacaacctgatgggccccctatggacgtgatcctccagccaatg
acgtcgcagagcatacgggtcacatggagggcccccaggaaggagcttcagaacggggtg
atccggggctaccagattggttaccgtgagaacgggccgggcagtaacggccagtacagc
attgtggagatgaaggccacaggggacagcgaggtgtacactctggacaacctgaagaag
tttgcccagtatggagtggtggtccaggccttcaacagggctggtactggcccctctagc
actgagatcaacgctaccacactggaggatgtgcccagccagccaccccagaacgtgcgg
gccatctcggtgacgtcagacgaggcggtgatcacatgggcggagcccccgcgtctgacg
ctgcatggcgtgctgaagggctaccgcgtagtgttctggtccctctttcctgacggaggt
gggtgctgtgggggccaggcacaggggccgatgcagaaatggggagagatgcagaacatc
actacaactcgtgagcaggtggagctgagagggctggagaagttcactaactacagtgtc
caggtgctggcctacacacaggctggggacggggtcaggagcaatgtcctgtacatccaa
acccgcgaggacctcccaggtcctccagctggtatcaaagccgtgccctcatctcccagc
agtgtggtcgtgtcctggctacccccccataaacccaatggtgtcatccgcaagtacacc
atctactgctccagcccaggctccggacagccggctcccagtgagtatgagaccaaccca
gagatgttgttctacaggatcacccatctgacccgcggtaaacagtacctcatctgggcc
gccgctgtgacaaccgctggccgcggcaacatcagcgaaaaggtcaccgtggagcctgct
gggaaagccccagctaagatcctgtcgttcgggggcacagtgaccactccctggatgaag
gagatctgtttgccttgcagctcagtgggagaacccacccccaccttcaaatggaccaaa
gacagtgagtacacggctattcctgtgactgtggatggacagcgtcagatcctgtccaat
ggtactctagtgctacgttccgtcaaagctgaggattctgggtactacacgtgcacggcc
accaacacgctgggctttgacaccatcattgtcaacctgctggtgcaagttcctccagac
cagccccgtctgaccgtctccaccacctctacctcttccatcaccctggcctggatacca
ggggacaacggaggcagctccatcagaggttttgtcctgcagtactcggtagacaacaca
gaggagtggagggatgtgttcattacttccactgagcgttccttcaggctggacaacctg
cgctgtggcacctggtacaaggtcaaactggcagccaagaacagtgtgggttcaggacgc
atctctgagatcatcgaggccaagacgcacggacgagagcctgcgttcaacaaggagcag
cccctgctcacccacatcaactccacccacgcggggctcaacctgcagggctggaccagc
ggcggctgccccatcaccgctctgctgctggacttccggcccaagggcacgtgggcctgg
cagagcctgaaggccaacgccacagcccagctcttcctcagcgagctgcgggaggccacc
tggtacgaactgaagatgaaggcctgcaacagtgccggctgtgggaaccagagctcccag
ttcgccaccacagactacgatggcagtaccatccctcctataaactcggcccaggaggac
agagatgatgtgaagaagctgttctccataggctctcctgtcatcctggtcaccctgggc
gtcgccctgctcttcatcatccgcaagaaacgcaaggagaagagactgaaacgactcaga
gatgctaagagccttgcagagatgcttatcagtaagaacaaccgcagcatggacacccca
gtgaagggtcctccccagggcccccggctccacatcgacataccccgtgtccagctgctg
atcgaggacaaggaggggatcaaacagataggtgaggacaaggcagtggccccagtgacg
gacagcgagttcagccaatcggtgaatccacagagcttctgcacgggcgtgtctctgcac
caccccgccctcatccagaacacagggccattgattgacatgtcagacatccgccctgga
accaacccagtgtcgaggaagagtgtgaagtcagcccacagctccaggaaccgttactcc
agccagtggaccttaagcaggccgggccagagccaatcaacagcctccgcaagaactctg
acctctgactggcgcaccatgggctctcacggcatcaccgccaccgagagtgacagctac
agcgccagcctgtcgcaggacactgataagggtcgtaacagcatggtgtccacagagagt
gcgtcgtctacgtacgaggagctagcgcgggcctacgaacacgccaaactggaggagcac
ctgcagcatgccaagttcaccatcacagaatgtttcatctccgacagctcctctgatcag
atgaccactggcaccaacgacccggccgacagcatgacatcactcagcacgccgtccgaa
acaggcctttgtcgcttcaccgcctcgccacccaaaccccaagactatgaccgcggcaga
cctaccaatgtggccgtgcccatcccccaccgcgccaacaagagtgaattctgcaacctc
ccactctacatgaagacagaccctttcttcaggaaacaggcagaactgcatgacccgtgc
cctgctgtaccgccccgggaggcctccatccgcagcctggcacagcgggcgtaccacacc
cagggccgtcacatgactctggacccgtccaagcagcaggccctgacgctgggacactct
gggctggccagcctgggtgtgagctcaggtactgccaccctgccccagaggactctcact
atgcccagctccaaccctgcagccacagcctccacctccagcaccagcagtaatcccact
ggctccagcaccaagatggggggctccagagactcactgctagagaacagctcctcagca
ttgggcagactgcagaagcaaggggtcggggcctactccaagtcttacacactggtgtag
DBGET
integrated database retrieval system
