Oncorhynchus tshawytscha (Chinook salmon): 112229415
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Entry
112229415 CDS
T05605
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
KO
K12857
Prp8 binding protein
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112229415
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
otw03041
]
112229415
Spliceosome [BR:
otw03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
112229415
Complex C
U5 SnRNP specific factors
112229415
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_TEP1_2nd
Beta-prop_EML_2
WDR55
EIF3I
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
Beta-prop_EML
WDR90_beta-prop_4th
NBCH_WD40
Beta-prop_SPT8
Beta-prop_EIPR1
ANAPC4_WD40
Beta-prop_SCAP
Beta-prop_IFT122_1st
WD40_MABP1-WDR62_1st
WD40_RFWD3
Beta-prop_RIG_2nd
Beta-prop_DCAF4
Beta-prop_WDR75_2nd
Beta-prop_IFT140_1st
Beta-prop_WDR19_1st
Beta-prop_Vps41
Beta-prop_WDR35_TULP_N
Beta-prop_IFT140_2nd
Beta-prop_NWD2_C
Motif
Other DBs
NCBI-GeneID:
112229415
NCBI-ProteinID:
XP_024251006
LinkDB
All DBs
Position
LG31:30880992..30892638
Genome browser
AA seq
348 aa
AA seq
DB search
MIEPKKRPADMAVVPAGGVKRPRAELIAAAQSQQLVAMGPPRSSSLQAPIMLMCGHEGEV
YCCKFHPNGATLASSGYDRLILMWNVYGDCDNFATLKGHSGAVMELHYNTDGSLLFSAST
DKTVGVWDSETGERIKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKKGAVHT
FQNTYQVLAVTFNDTSDQILSGGIDNDIKVWDLRQNKMIYGMHGHGDSLTGLCLSSEGSY
LLSNSMDNTVRIWDVRPFAPKERCVKIFQGNIHNFEKNLLRCSWSADGSKIAAGSADRFV
YVWDTTSRRILYKLPGHAGSVNEVAFHPEEPIVLSGASDKRLYMGEIQ
NT seq
1047 nt
NT seq
+upstream
nt +downstream
nt
atgattgagccaaagaagagaccggcggacatggcggtggttcctgccggtggagtcaag
aggcccagggccgagctgatcgctgcggcacagtcgcaacaactcgtggccatgggccct
ccccgcagctccagcctgcaggctcccatcatgttgatgtgcggccatgagggagaggtc
tactgctgcaagttccatcctaacggggccacactggcctcctctggctatgacaggctc
atcttgatgtggaatgtgtacggggactgtgataactttgccaccctgaagggacacagt
ggtgctgtgatggagcttcactacaacacagacggcagcctgctgttcagtgccagcaca
gacaagactgtgggagtgtgggacagtgagacgggtgagaggatcaagcgtctgaaaggc
cacacctccttcgttaactcctgctaccctgctcgccgcgggcctcagctcgtctgtacc
ggcagcgacgacggaaccgtcaagctgtgggacatccgtaagaagggggcagtccatacg
ttccagaacacctaccaggtattggccgtcacattcaacgacaccagcgaccagatcctg
tctggaggcatcgacaacgacatcaaggtgtgggacctgaggcagaataagatgatctat
ggtatgcatggtcatggagattctctgactggcctctgtctgagctcagagggatcctac
ctcctctccaactccatggacaacacagtacgtatttgggacgtccgtccgttcgctccc
aaggagaggtgtgtgaagatattccaggggaacattcacaactttgagaagaaccttctg
aggtgttcctggtctgctgacggcagcaagattgctgcaggctcagctgacaggtttgtg
tatgtgtgggacaccacctctcgtaggatcctgtacaagctgccaggccacgctgggtcc
gtcaacgaggttgccttccatcccgaggagcccattgtcctctctggcgcaagtgacaag
agactctacatgggagagattcagtag
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integrated database retrieval system
